Add new Pathfinder arguments #964
Workflow file for this run
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| name: CmdStanPy | |
| on: | |
| push: | |
| branches: | |
| - 'develop' | |
| - 'master' | |
| tags: | |
| - '**' | |
| pull_request: | |
| workflow_dispatch: | |
| inputs: | |
| cmdstan-version: | |
| description: 'Version to test' | |
| required: false | |
| default: '' | |
| # only run one copy per PR | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| get-cmdstan-version: | |
| # get the latest cmdstan version to use as part of the cache key | |
| name: grab version | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Get CmdStan version | |
| id: check-cmdstan | |
| run: | | |
| if [[ "${{ github.event.inputs.cmdstan-version }}" != "" ]]; then | |
| echo "version=${{ github.event.inputs.cmdstan-version }}" >> $GITHUB_OUTPUT | |
| else | |
| python -c 'import requests;print("version="+requests.get("https://api.github.com/repos/stan-dev/cmdstan/releases/latest").json()["tag_name"][1:])' >> $GITHUB_OUTPUT | |
| fi | |
| outputs: | |
| version: ${{ steps.check-cmdstan.outputs.version }} | |
| cmdstanpy: | |
| needs: get-cmdstan-version | |
| name: tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check out github | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies (python) | |
| run: | | |
| python -m pip install --upgrade pip wheel build | |
| pip install -r requirements.txt | |
| pip install -r requirements-test.txt | |
| pip install codecov | |
| - name: Run flake8, pylint, mypy | |
| if: matrix.python-version == '3.11' | |
| run: | | |
| flake8 cmdstanpy test | |
| pylint -v cmdstanpy test | |
| mypy cmdstanpy | |
| - name: Build wheel | |
| run: python -m build | |
| - name: Install wheel (Linux, macOS) | |
| if: matrix.os != 'windows-latest' | |
| run: pip install dist/*.whl | |
| - name: Install wheel (Windows) | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| $whl = Get-ChildItem -Path dist -Filter *.whl | Select-Object -First 1 | |
| pip install "$whl" | |
| - name: Show libraries | |
| run: python -m pip freeze | |
| - name: CmdStan installation cacheing | |
| id: cache-cmdstan | |
| if: ${{ !startswith(needs.get-cmdstan-version.outputs.version, 'git:') }} | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cmdstan | |
| key: ${{ runner.os }}-cmdstan-${{ needs.get-cmdstan-version.outputs.version }}-${{ hashFiles('**/install_cmdstan.py') }} | |
| - name: Delete precompiled header (MacOS) | |
| if: matrix.os == 'macos-latest' && steps.cache-cmdstan.outputs.cache-hit == 'true' | |
| run: rm -f ~/.cmdstan/cmdstan-${{ needs.get-cmdstan-version.outputs.version }}/stan/src/stan/model/*.hpp.gch | |
| - name: Install CmdStan (Linux, macOS) | |
| if: matrix.os != 'windows-latest' | |
| run: | | |
| install_cmdstan -h | |
| install_cxx_toolchain -h | |
| python -c "import cmdstanpy; cmdstanpy.install_cmdstan(version='${{ needs.get-cmdstan-version.outputs.version }}', cores=2)" | |
| - name: Install CmdStan (Windows) | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| install_cmdstan -h | |
| install_cxx_toolchain -h | |
| $env:TBB_CXXFLAGS = "-D_UCRT" | |
| python -m cmdstanpy.install_cmdstan --version ${{ needs.get-cmdstan-version.outputs.version }} --cores 2 | |
| echo "TBB_CXXFLAGS+=-D_UCRT" >> ~/.cmdstan/cmdstan-${{ needs.get-cmdstan-version.outputs.version }}/make/local | |
| - name: Run tests | |
| run: | | |
| mkdir run_tests | |
| cd run_tests | |
| pytest -v ../test --cov=../cmdstanpy | |
| - name: Run model with requirements-optional.txt | |
| run: | | |
| cd run_tests | |
| python -m pip install -r ../requirements-optional.txt | |
| python ../test/example_script.py | |
| - name: Submit codecov | |
| run: | | |
| cd run_tests | |
| codecov |