seq_adapters_contaminants

Sequencing adapters and contaminants collection from different tools for easy download.

Tools

• bbmap - https://sourceforge.net/projects/bbmap/
• atropos - https://github.com/jdidion/atropos/
• FastQC - https://github.com/s-andrews/FastQC

One combined file

Read all fasta adapter files. Make a file with unique sequences. Id will be the first occurrence.

For some tools the order of the sequences in the adapter file matter(e.g. bbduk), thus here we keep the order as first seen first in union.

python union.py bbmap/xxx/adapters.fa atropos/xxx/sequencing_adapters.fa fastqc/xxx/contaminant_list.fa > adapters_union.fa