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DOC Update README before pushing qipype
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spinicist committed Jun 26, 2020
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198 changes: 0 additions & 198 deletions Python/example_notebook.ipynb

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2 changes: 1 addition & 1 deletion Python/setup.py
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setup(
name='qipype',
version='1.0',
version='0.1',
description='nipype interfaces to QUantitative Imaging Tools',
long_description=long_description,
long_description_content_type="text/markdown",
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10 changes: 4 additions & 6 deletions README.md
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### Python

QUIT now comes with `nipype` wrappers. Install with `pip install QUIT`.
QUIT now comes with `nipype` wrappers. Install with `pip install qipype`.

## Usage

Expand All @@ -61,11 +61,9 @@ of commands require an input 4D Nifti file containing the image data to fit,
and a `.json` file containing the sequence parameters (e.g. `TR`). See
examples for each command at http://quit.readthedocs.io.

For the `nipype` wrappers, there are example iPython notebooks available in this
directory https://github.com/spinicist/QUIT/blob/master/Python/. You can
download the one for T1 mapping here https://github.com/spinicist/QUIT/raw/master/Python/T1_mapping.ipynb.
Alternatively, look at the example workflows for CEST and MPM to see how to
build a complete pipeline.
There is an example iPython notebooks available in this
directory https://mybinder.org/v2/gh/spinicist/QUIT/master?filepath=Python%2FNotebooks%2FT1_mapping.ipynb.
Workflows for CEST and MPM are provided in `qipype.workflows`.

## Getting Help

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