Use QI mask instead of BET #163
Workflow file for this run
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| name: Build | |
| # This workflow is triggered on pushes to the repository. | |
| on: push | |
| env: | |
| BUILD_TYPE: Release | |
| jobs: | |
| build: | |
| name: ${{matrix.config.name}} | |
| runs-on: ${{matrix.config.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { | |
| name: "Ubuntu GCC", artifact: "qi-linux.tar.gz", | |
| os: ubuntu-22.04, | |
| cc: "gcc-11", cxx: "g++-11" | |
| } | |
| - { | |
| name: "macOS", artifact: "qi-macos.tar.gz", | |
| os: macos-12, | |
| cc: "clang", cxx: "clang++" | |
| } | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: 'recursive' | |
| fetch-depth: 0 | |
| - name: Install Build Tools | |
| shell: bash | |
| run: | | |
| if [ "${{runner.os}}" == "macOS" ]; then | |
| brew install gnu-tar automake autoconf autoconf-archive | |
| else | |
| sudo apt-get update | |
| sudo apt-get install automake autoconf autoconf-archive | |
| fi | |
| - name: Restore vcpkg binary cache | |
| id: cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/vcpkg/ | |
| key: ${{runner.os}}-${{hashFiles( 'vcpkg.json' ) }}-${{hashFiles( '.git/modules/cmake/HEAD' )}}-vcpkg-cache | |
| - name: Build | |
| shell: bash | |
| env: | |
| CC: ${{matrix.config.cc}} | |
| CXX: ${{matrix.config.cxx}} | |
| run: | | |
| TC="${{github.workspace}}/cmake/toolchain.cmake" | |
| export VCPKG_OVERLAY_TRIPLETS="${{github.workspace}}/cmake/triplets" | |
| export FLAGS="ci" | |
| cd ${{github.workspace}} | |
| cmake -B build -S . \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_TOOLCHAIN_FILE="$TC" | |
| cmake --build build | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.7 | |
| - name: Prepare Python | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install nipype | |
| pip install -e ./Python/ | |
| shell: bash | |
| - name: Run Tests | |
| working-directory: ./Python/Tests | |
| shell: bash | |
| run: | | |
| if [ "${{runner.os}}" != "macOS" ]; then # MacOS runners do not have AVX2 | |
| export PATH="$PWD/../../build/Source:$PATH"; python -m unittest discover | |
| fi | |
| - name: Save release | |
| run: | | |
| mv ./build/Source/qi ./qi | |
| if [ "${{runner.os}}" == "macOS" ]; then | |
| echo "Using GNU tar" | |
| gtar -czf ${{matrix.config.artifact}} qi | |
| else | |
| echo "Using system tar" | |
| tar -czf ${{matrix.config.artifact}} qi | |
| fi | |
| shell: bash | |
| - name: Upload | |
| uses: actions/upload-artifact@v1 | |
| with: | |
| path: ./${{matrix.config.artifact}} | |
| name: ${{matrix.config.artifact}} | |
| release: | |
| if: contains(github.ref, 'tags/v') | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Create Release | |
| id: create_release | |
| uses: actions/[email protected] | |
| env: | |
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
| with: | |
| tag_name: ${{github.ref}} | |
| release_name: Release ${{github.ref}} | |
| draft: true | |
| prerelease: false | |
| - name: Store Release URL | |
| run: | | |
| echo "${{steps.create_release.outputs.upload_url}}" > ./upload_url | |
| - uses: actions/upload-artifact@v1 | |
| with: | |
| path: ./upload_url | |
| name: upload_url | |
| publish: | |
| if: contains(github.ref, 'tags/v') | |
| name: ${{matrix.config.name}} | |
| runs-on: ${{matrix.config.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { | |
| name: "Ubuntu GCC", artifact: "qi-linux.tar.gz", | |
| os: ubuntu-16.04 | |
| } | |
| - { | |
| name: "macOS", artifact: "qi-macos.tar.gz", | |
| os: macos-10.15 | |
| } | |
| needs: release | |
| steps: | |
| - name: Download Artifact | |
| uses: actions/download-artifact@v1 | |
| with: | |
| name: ${{matrix.config.artifact}} | |
| path: ./ | |
| - name: Download URL | |
| uses: actions/download-artifact@v1 | |
| with: | |
| name: upload_url | |
| path: ./ | |
| - name: Set Upload URL | |
| id: set_upload_url | |
| run: | | |
| URL=`cat ./upload_url` | |
| echo ${URL} | |
| echo "::set-output name=upload_url::${URL}" | |
| - name: Upload to Release | |
| id: upload_to_release | |
| uses: actions/[email protected] | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ steps.set_upload_url.outputs.upload_url }} | |
| asset_path: ./${{ matrix.config.artifact }} | |
| asset_name: ${{ matrix.config.artifact }} | |
| asset_content_type: application/gzip |