run pytest directly (tox does not use environment)

.github/workflows/test.yaml

@@ -22,114 +22,38 @@ env:
 jobs:
  build:
  uses: ./.github/workflows/build.yaml
- unit_tests_via_tox:
+ unit_tests_via_package:
  needs: [ build ]
  strategy:
+ fail-fast: false
  matrix:
- package: [ acstools, asdf, calcos, ccdproc, costools, synphot, jwst ]
+ package: [ acstools, asdf, calcos, ccdproc, costools, jwst, reftools, synphot, wfpc2tools ]
  # the macOS 13 runner is on Intel hardware
  runs-on: [ ubuntu-latest, macos-13, macos-latest ]
  python-version: [ '3.10', '3.11', '3.12' ]
  include:
  - package: acstools
- repository: spacetelescope/acstools
- default_factors: test-alldeps
+ extras: [ all, test ]
  args: --remote-data -v
  - package: asdf
- repository: asdf-format/asdf
- default_factors: parallel
+ extras: [ all, tests ]
  - package: calcos
- repository: spacetelescope/calcos
- default_factors: xdist
+ extras: [ test ]
  - package: ccdproc
- repository: astropy/ccdproc
- default_factors: alldeps
+ extras: [ test ]
  - package: costools
- repository: spacetelescope/costools
- default_factors: test-xdist
- - package: synphot
- repository: spacetelescope/synphot_refactor
- default_factors: test-alldeps
- args: --remote-data
+ extras: [ test ]
  - package: jwst
- repository: spacetelescope/jwst
- default_factors: xdist
- args: --slow -k "not test_cmdline_status"
+ extras: [ test ]
  env:
  CRDS_SERVER_URL: https://jwst-crds.stsci.edu
- exclude:
- - runs-on: macos-13
- python-version: '3.10'
- - runs-on: macos-13
- python-version: '3.11'
- - runs-on: macos-latest
- python-version: '3.10'
- - runs-on: macos-latest
- python-version: '3.11'
- fail-fast: false
- runs-on: ${{ matrix.runs-on }}
- name: ${{ matrix.package }} (Python ${{ matrix.python-version }}, tox ${{ matrix.default_factors }}${{ matrix.args != '' && ' -- ' || '' }}${{ matrix.args }}, ${{ matrix.runs-on }})
- steps:
- - uses: actions/checkout@v4
- with:
- path: stenv
- - uses: actions/checkout@v4
- with:
- path: ${{ matrix.package }}
- repository: ${{ matrix.repository }}
- ref: ${{ steps.package_version.outputs.version }}
- fetch-depth: 0
- - uses: mamba-org/setup-micromamba@v1
- with:
- environment-name: stenv-${{ runner.os }}-py${{ matrix.python-version }}
- environment-file: stenv/environment.yaml
- create-args: >-
- python=${{ matrix.python-version }}
- cache-downloads: true
- cache-downloads-key: downloads-${{ needs.build.outputs.date }}
- cache-environment: true
- cache-environment-key: environment-${{ needs.build.outputs.date }}
- init-shell: none
- generate-run-shell: true
- - run: echo "version=$(pip list | awk '$1 == "${{ matrix.package }}" {print $2}')" >> $GITHUB_OUTPUT
- id: package_version
- # TODO: figure out a better way to use package version when checking out a Git ref
- - run: micromamba install tox
- - run: pip list
- - if: matrix.env.CRDS_SERVER_URL != ''
- run: echo "context=$(crds list --operational-context)" >> $GITHUB_OUTPUT
- id: crds-context
- env:
- CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }}
- - if: steps.crds-context.outputs.context != ''
- uses: actions/cache@v4
- with:
- path: ${{ env.CRDS_PATH }}
- key: crds-${{ matrix.package }}-${{ steps.crds-context.outputs.context }}
- - name: parse tox factor
- uses: actions/github-script@v7
- id: python-factor
- with:
- script: |
- core.setOutput('factor', 'py${{ matrix.python-version }}'.replaceAll(/[/.]/g, ''));
- - run: tox -e ${{ steps.python-factor.outputs.factor }}${{ matrix.default_factors != '' && '-' || '' }}${{ matrix.default_factors }}${{ matrix.args != '' && ' -- ' || '' }}${{ matrix.args }}
- working-directory: ${{ matrix.package }}
- env:
- CRDS_SERVER_URL: ${{ matrix.env.CRDS_SERVER_URL }}
- unit_tests_via_package:
- needs: [ build ]
- strategy:
- fail-fast: false
- matrix:
- package: [ reftools, wfpc2tools ]
- # the macOS 13 runner is on Intel hardware
- runs-on: [ ubuntu-latest, macos-13, macos-latest ]
- python-version: [ '3.10', '3.11', '3.12' ]
- include:
  #- package: pysynphot
  # extras: [ test ]
  - package: reftools
  extras: [ test ]
+ - package: synphot
+ extras: [ test ]
+ args: --remote-data
  - package: wfpc2tools
  exclude:
  - runs-on: macos-13
@@ -317,7 +241,7 @@ jobs:
  - run: pip uninstall --yes crds && ./install && pip install .[submission,test,docs,synphot]
  working-directory: ${{ matrix.package }}
  - id: cache
- uses: actions/cache@v4
+ uses: actions/cache/restore@v4
  with:
  path: |
  ${{ needs.crds_test_cache.outputs.path }}