spacetelescope · dulude · Oct 5, 2023 · Sep 8, 2021 · Sep 8, 2021 · Sep 10, 2021
diff --git a/_toc.yml b/_toc.yml
@@ -56,3 +56,22 @@ parts:
     - file: notebooks/STIS/target_acquisition/target_acquisition.ipynb
     - file: notebooks/STIS/view_data/view_data.ipynb
     - file: notebooks/STIS/extraction/1D_Extraction.ipynb
+  - caption: WFC3
+    chapters:
+      - file: notebooks/WFC3/README.md
+      - file: notebooks/WFC3/calwf3_recalibration/calwf3_recal_tvb.ipynb
+      - file: notebooks/WFC3/calwf3_v1.0_cte/calwf3_with_v1.0_PCTE.ipynb
+      - file: notebooks/WFC3/dash/dash.ipynb
+      - file: notebooks/WFC3/exception_report/wfc3_exception_report.ipynb
+      - file: notebooks/WFC3/filter_transformations/filter_transformations.ipynb
+      - file: notebooks/WFC3/flux_conversion_tool/flux_conversion_tool.ipynb
+      - file: notebooks/WFC3/image_displayer_analyzer/wfc3_image_displayer_analyzer.ipynb
+      - file: notebooks/WFC3/ir_ima_visualization/IR_IMA_Visualization_with_an_Example_of_Time_Variable_Background.ipynb
+      - file: notebooks/WFC3/ir_scattered_light_calwf3_corrections/Correcting_for_Scattered_Light_in_IR_Exposures_Using_calwf3_to_Mask_Bad_Reads.ipynb
+      - file: notebooks/WFC3/ir_scattered_light_manual_corrections/Correcting_for_Scattered_Light_in_IR_Exposures_by_Manually_Subtracting_Bad_Reads.ipynb
+      - file: notebooks/WFC3/persistence/wfc3_ir_persistence.ipynb
+      - file: notebooks/WFC3/photometry_examples/phot_examples.ipynb
+      - file: notebooks/WFC3/tvb_flattenramp/TVB_flattenramp_notebook.ipynb
+      - file: notebooks/WFC3/uvis_pam_corrections/WFC3_UVIS_Pixel_Area_Map_Corrections_for_Subarrays.ipynb
+      - file: notebooks/WFC3/uvis_time_dependent_photometry/uvis_timedep_phot.ipynb
+      - file: notebooks/WFC3/zeropoints/zeropoints.ipynb
diff --git a/notebooks/ACS/acs_cte_forward_model/requirements.txt b/notebooks/ACS/acs_cte_forward_model/requirements.txt
@@ -1,8 +1,6 @@
-acstools==3.6.1
+acstools==3.5.0
 astropy==5.2.1
 astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
 photutils==1.6.0
-crds==11.16.14
-stsci-tools==4.0.1
diff --git a/notebooks/ACS/acs_findsat_mrt/requirements.txt b/notebooks/ACS/acs_findsat_mrt/requirements.txt
@@ -1,13 +1,5 @@
-acstools==3.6.1
+acstools==3.5.0
 astropy==5.2.1
+astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
-astroquery==0.4.6
-stsci-image==2.3.5
-stsci-imagestats==1.6.3
-stsci-skypac==1.0.9 
-stsci-stimage==0.2.5 
-stsci-tools==4.0.1 
-crds==11.16.14
-photutils==1.6.0
-scikit-image==0.19.3
diff --git a/notebooks/ACS/acs_pixel_area_maps/requirements.txt b/notebooks/ACS/acs_pixel_area_maps/requirements.txt
@@ -1,6 +1,5 @@
 astropy==5.2.1
 astroquery==0.4.6
-matplotlib==3.7.0
 stsci.image==2.3.5
 stsci.imagestats==1.6.3
 stsci.skypac==1.0.9

diff --git a/notebooks/ACS/acs_reduction/requirements.txt b/notebooks/ACS/acs_reduction/requirements.txt
@@ -1,5 +1,3 @@
 astropy==5.2.1
 astroquery==0.4.6
-matplotlib==3.7.0
 stwcs==1.7.2
-crds==11.16.14
diff --git a/notebooks/ACS/acs_saturation_trails/requirements.txt b/notebooks/ACS/acs_saturation_trails/requirements.txt
@@ -3,7 +3,7 @@ astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
 photutils==1.6.0
-scipy==1.11.1
+scipy==1.9.1
 stsci.image==2.3.5
 stsci.imagestats==1.6.3
 stsci.skypac==1.0.9

diff --git a/notebooks/ACS/acs_subarrays/requirements.txt b/notebooks/ACS/acs_subarrays/requirements.txt
@@ -2,4 +2,3 @@ acstools==3.5.0
 astropy==5.2.1
 astroquery==0.4.6
 stwcs==1.7.2
-crds==11.16.14
diff --git a/notebooks/COS/DayNight/requirements.txt b/notebooks/COS/DayNight/requirements.txt
@@ -4,4 +4,3 @@ calcos==3.4.4
 costools==1.2.6
 matplotlib==3.7.0
 numpy==1.23.4
-crds==11.17.0
diff --git a/notebooks/COS/Extract/requirements.txt b/notebooks/COS/Extract/requirements.txt
@@ -3,5 +3,4 @@ astroquery==0.4.6
 calcos==3.4.4
 matplotlib==3.7.0
 numpy==1.23.4
-scipy==1.11.1
-crds==11.17.0
+scipy==1.9.1
diff --git a/notebooks/COS/LSF/requirements.txt b/notebooks/COS/LSF/requirements.txt
@@ -1,5 +1,5 @@
-astropy>=5.2.1
-astroquery>=0.4.6
-matplotlib>=3.7.0
-numpy>=1.23.4
-scipy>=1.11.1
+astropy==5.2.1
+astroquery==0.4.6
+matplotlib==3.7.0
+numpy==1.23.4
+scipy==1.9.1
diff --git a/notebooks/DrizzlePac/mask_satellite/requirements.txt b/notebooks/DrizzlePac/mask_satellite/requirements.txt
@@ -1,7 +1,8 @@
-acstools==3.6.1
+acstools==3.5.0
 astropy==5.2.1
 astroquery==0.4.6
 drizzlepac==3.5.1
 ipython==8.11.0
 matplotlib==3.7.0
 pyregion==2.2.0
+skimage==0.0
diff --git a/notebooks/STIS/calstis/requirements.txt b/notebooks/STIS/calstis/requirements.txt
@@ -1,8 +1,4 @@
 astropy==5.2.1
 astroquery==0.4.6
-ipython==8.11.0
 matplotlib==3.7.0
-numpy==1.23.4
-pandas==1.5.3
 stistools==1.4.4
-crds==11.17.3
diff --git a/notebooks/STIS/cross-correlation/requirements.txt b/notebooks/STIS/cross-correlation/requirements.txt
@@ -2,6 +2,5 @@ astropy==5.2.1
 astroquery==0.4.6
 matplotlib==3.7.0
 numpy==1.23.4
-scipy==1.11.1
+scipy==1.9.1
 stistools==1.4.4
-crds==11.17.3
diff --git a/notebooks/STIS/custom_ccd_darks/requirements.txt b/notebooks/STIS/custom_ccd_darks/requirements.txt
@@ -1,7 +1,6 @@
 astropy==5.2.1
 astroquery==0.4.6
-crds==11.16.20
 matplotlib==3.7.0
 numpy==1.23.4
+refstis==0.6.1
 stistools==1.4.4
-refstis==0.8.2
diff --git a/notebooks/STIS/drizpac_notebook/requirements.txt b/notebooks/STIS/drizpac_notebook/requirements.txt
@@ -1,15 +1,8 @@
 astropy==5.2.1
 astroquery==0.4.6
-crds==11.17.3
-drizzlepac==3.6.1
+drizzlepac==3.5.1
 ipython==8.11.0
-matplotlib==3.6.0
+matplotlib==3.7.0
+numpy==1.23.4
 pandas==1.5.3
-stistools==1.4.4
-stsci.tools==4.0.1
-pysynphot==1.0.0
-photutils==1.9.0
-setuptools==52.0.0
-stwcs==1.6.1
-stis_cti @ git+https://github.com/spacetelescope/stis_cti@master
-refstis==0.8.2
+stis_cti==1.1
diff --git a/notebooks/WFC3/README.md b/notebooks/WFC3/README.md
@@ -0,0 +1,106 @@
+WFC3Library
+===========
+
+Here the user will find the latest Python-based software notebooks for the Wide
+Field Camera 3 (WFC3) on the Hubble Space Telescope (HST). For our primary WFC3
+user-support tools, see [wfc3tools](https://github.com/spacetelescope/wfc3tools) and 
+[WFC3 Software Tools](https://www.stsci.edu/hst/instrumentation/wfc3/software-tools).
+
+WFC3Library is the primary repository for Jupyter notebooks, including general tools, 
+WFC3/IR, time variable background (TVB), and photometry. This repository contains the 
+complementary notebooks mentioned in the [WFC3 Data Handbook](https://hst-docs.stsci.edu/wfc3dhb). 
+These notebooks include:
+
+General Tools:
+- WFC3 Image Displayer and Analyzer
+- Exception Report Checklist - WFC3
+- Processing WFC3/UVIS Data with `calwf3` Using the v1.0 CTE-Correction
+
+WFC3/IR:
+- Masking Persistence in WFC3/IR Images
+- How to use `wfc3_dash` on DASH data
+
+WFC3/IR Time Variable Background (TVB):
+- WFC3/IR IMA Visualization Tools with an Example of Time Variable Background
+- Manual Recalibration of Images using `calwf3`: Turning off the WFC3/IR Linear Ramp Fit
+- Correcting for Helium Line Emission Background in WFC3/IR Exposures using the "Flatten-Ramp" Technique
+- Correcting for Scattered Light in WFC3/IR Exposures: Manually Subtracting Bad Reads
+- Correcting for Scattered Light in WFC3/IR Exposures: Using `calwf3` to Mask Bad Reads
+
+Photometry:
+- WFC3/UVIS Filter Transformations with `stsynphot`
+- Flux Unit Conversions with `synphot` and `stsynphot`
+- Synthetic Photometry Examples for WFC3
+- WFC3/UVIS Time-dependent Photometry
+- Calculating WFC3 Zeropoints with `stsynphot`
+- WFC3/UVIS Pixel Area Map Corrections for Subarrays
+
+Each folder in `notebooks` has an individual `README.md` with further 
+details and a HTML file that can be opened in a browser after cloning this 
+repository. The HTML file is identical to the notebook, except they contain 
+output plots and tables.
+
+Installation
+------------
+
+All notebooks require the virtual environment `stenv-stable` (last stable 
+version used for review was December 2022), which contains libraries necessary
+for processing and analyzing data from the Hubble Space Telescope (HST) and the
+James Webb Space Telescope (JWST).
+
+To install, see [stenv readthedocs](https://stenv.readthedocs.io/en/latest/)
+or [stenv GitHub](https://github.com/spacetelescope/stenv). 
+
+In addition, the individual `README.md` files in `notebooks` may have 
+further installation instructions. Please read them to run the notebooks 
+properly.
+
+With the environment activated and additional libraries installed based on the
+individual `README.md` files, you will be able to complete the notebooks.
+
+Installation (Legacy Environment)
+---------------------------------
+
+**WARNING: `wfc3_env` is a legacy environment, meaning it is deprecated**
+**and no longer maintained. We recommend using `stenv-stable` in all cases.**
+
+All notebooks used to require the same anaconda virtual environment named 
+`wfc3_env`. To create the virtual environment, run this line in a terminal 
+window:
+
+    conda env create -f wfc3_env_legacy.yml
+
+To activate `wfc3_env`, run this line in a terminal window:
+
+    conda activate wfc3_env
+
+You can also create and activate `wfc3_env_no_builds`, which is `wfc3_env` 
+but without the build specifications to avoid platform specific conflicts.
+
+Please read the individual `README.md` files in `notebooks` for further 
+installation instructions.
+
+Contributing
+------------
+
+Please open a new issue or new pull request for bugs, feedback, or new features
+you would like to see. If there is an issue you would like to work on, please
+leave a comment and we will be happy to assist. New contributions and
+contributors are very welcome!
+
+WFC3Library follows the 
+[Astropy Code of Conduct](https://www.astropy.org/code_of_conduct.html)
+and strives to provide a welcoming community to all of our users and 
+contributors.
+
+Want more information about how to make a contribution?  Take a look at
+the the `astropy` 
+[contributing](https://www.astropy.org/contribute.html)
+and [developer](https://docs.astropy.org/en/stable/index.html#developer-documentation) 
+documentation.
+
+
+License
+-------
+
+WFC3Library is licensed under a 3-clause BSD style license (see the `LICENSE.txt` file).
diff --git a/notebooks/WFC3/calwf3_recalibration/README.md b/notebooks/WFC3/calwf3_recalibration/README.md
@@ -0,0 +1 @@
+A new Jupyter notebook provides `calwf3` reprocessing examples to improve calibrated WFC3/IR images affected by time-variable background. The notebook shows how to diagnose images with poor-quality ramp fits and rerun `calwf3` with the 'CRCORR' step turned off. This method is described as the 'Last-minus-first' technique [WFC3 ISR 2016-16](https://www.stsci.edu/files/live/sites/www/files/home/hst/instrumentation/wfc3/documentation/instrument-science-reports-isrs/_documents/2016/WFC3-2016-16.pdf). See Section 3.5.2 of the [WFC3 Data Handbook](https://hst-docs.stsci.edu/wfc3dhb) for more information.
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		A new Jupyter notebook provides `calwf3` reprocessing examples to improve calibrated WFC3/IR images affected by time-variable background. The notebook shows how to diagnose images with poor-quality ramp fits and rerun `calwf3` with the 'CRCORR' step turned off. This method is described as the 'Last-minus-first' technique [WFC3 ISR 2016-16](https://www.stsci.edu/files/live/sites/www/files/home/hst/instrumentation/wfc3/documentation/instrument-science-reports-isrs/_documents/2016/WFC3-2016-16.pdf). See Section 3.5.2 of the [WFC3 Data Handbook](https://hst-docs.stsci.edu/wfc3dhb) for more information.