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Fix WFC3 IR Scattered Light Notebooks #319

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merged 2 commits into from
Oct 21, 2024
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This notebook checklist has been made available to us by the Notebooks For All team.
Its purpose is to serve as a guide for both the notebook author and the technical reviewer highlighting critical aspects to consider when striving to develop an accessible and effective notebook.

The First Cell

  • The title of the notebook in a first-level heading (eg. <h1> or # in markdown).
  • A brief description of the notebook.
  • A table of contents in an ordered list (1., 2., etc. in Markdown).
  • The author(s) and affiliation(s) (if relevant).
  • The date first published.
  • The date last edited (if relevant).
  • A link to the notebook's source(s) (if relevant).

The Rest of the Cells

  • There is only one H1 (# in Markdown) used in the notebook.
  • The notebook uses other heading tags in order (meaning it does not skip numbers).

Text

  • All link text is descriptive. It tells users where they will be taken if they open the link.
  • All acronyms are defined at least the first time they are used.
  • Field-specific/specialized terms are used when needed, but not excessively.

Code

  • Code sections are introduced and explained before they appear in the notebook. This can be fulfilled with a heading in a prior Markdown cell, a sentence preceding it, or a code comment in the code section.
  • Code has explanatory comments (if relevant). This is most important for long sections of code.
  • If the author has control over the syntax highlighting theme in the notebook, that theme has enough color contrast to be legible.
  • Code and code explanations focus on one task at a time. Unless comparison is the point of the notebook, only one method for completing the task is described at a time.

Images

  • All images (jpg, png, svgs) have an image description. This could be

    • Alt text (an alt property)
    • Empty alt text for decorative images/images meant to be skipped (an alt attribute with no value)
    • Captions
    • If no other options will work, the image is decribed in surrounding paragraphs.
  • Any text present in images exists in a text form outside of the image (this can be alt text, captions, or surrounding text.)

Visualizations

  • All visualizations have an image description. Review the previous section, Images, for more information on how to add it.

  • Visualization descriptions include

    • The type of visualization (like bar chart, scatter plot, etc.)
    • Title
    • Axis labels and range
    • Key or legend
    • An explanation of the visualization's significance to the notebook (like the trend, an outlier in the data, what the author learned from it, etc.)
  • All visualizations and their parts have enough color contrast (color contrast checker) to be legible. Remember that transparent colors have lower contrast than their opaque versions.

  • All visualizations convey information with more visual cues than color coding. Use text labels, patterns, or icons alongside color to achieve this.

  • All visualizations have an additional way for notebook readers to access the information. Linking to the original data, including a table of the data in the same notebook, or sonifying the plot are all options.

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@FDauphin
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Fix for Scheduled Notebook Execution Failure 55 with following Error:

FileNotFoundError: [Errno 2] No such file or directory: 'f140w_drz.fits'

Problem:

  • In drizzlepac 3.5.1 (last version for testing), mdriztab=True was overwriting build=False for astrodrizzle.Astrodrizzle so the output file was f140w_drz.fits
  • In drizzlepac 3.7.1.1 (most recent version installed for CI), the mdriz=True bug was resolved so build=False was correctly implemented and the output file was f140w_drz_sci.fits

Solution:

  • Change file to correct name
  • All results are nominal with this change

Misc:

  • To make the complementary notebook for correcting scattered light using calwf3 consistent with this notebook, I added mdriztab=True to the drizzling step of the former notebook as well
  • To both notebooks, I also added clean=True to reduce the number of output files saved

@FDauphin FDauphin changed the title Fix wfc3 ir scatter manual Fix wfc3 ir scatter notebooks Oct 21, 2024
@FDauphin FDauphin changed the title Fix wfc3 ir scatter notebooks Fix WFC3 ir scatter notebooks Oct 21, 2024
@FDauphin FDauphin changed the title Fix WFC3 ir scatter notebooks Fix WFC3 IR Scattered Light Notebooks Oct 21, 2024
@FDauphin
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@haticekaratay This PR passes all checks and is ready for review. If there's anything you want to be verified, feel free to ask me or @annierose3

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@haticekaratay haticekaratay left a comment

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Thanks for patching the notebooks. They look good to me, technically.

@haticekaratay haticekaratay merged commit a4b9ca8 into main Oct 21, 2024
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@haticekaratay haticekaratay deleted the fix_wfc3_ir_scatter_manual branch October 21, 2024 22:07
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3 participants