deploy: 1468a68

notebooks/WFC3/calwf3_v1.0_cte/calwf3_with_v1.0_PCTE.html

@@ -712,7 +712,7 @@ <h2>2. Verify <code class="docutils literal notranslate"><span class="pre">archi
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-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>-rw-r--r-- 1 runner docker 350644 Nov 17 20:45 archived_drkcfiles.txt
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>-rw-r--r-- 1 runner docker 350644 Nov 30 17:39 archived_drkcfiles.txt
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@@ -792,7 +792,7 @@ <h2>4. Query MAST and Download a WFC3 <code class="docutils literal notranslate"
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-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>-rw-r--r-- 1 runner docker 34891200 Nov 17 20:54 idv404axq_raw.fits
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>-rw-r--r-- 1 runner docker 34891200 Nov 30 17:51 idv404axq_raw.fits
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@@ -879,7 +879,7 @@ <h2>5.2 Inspect Image Header<a class="headerlink" href="#inspect-image-header" t
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-<table id="table139800077469968" class="table-striped table-bordered table-condensed">
+<table id="table139736663041616" class="table-striped table-bordered table-condensed">
 <thead><tr><th>file</th><th>date-obs</th><th>expstart</th><th>pctetab</th><th>drkcfile</th><th>pctecorr</th></tr></thead>
 <thead><tr><th>str18</th><th>str10</th><th>float64</th><th>str23</th><th>str23</th><th>str7</th></tr></thead>
 <tr><td>idv404axq_raw.fits</td><td>2019-07-29</td><td>58693.181643</td><td>iref$54l1347ei_cte.fits</td><td>iref$7bg1930ki_dkc.fits</td><td>PERFORM</td></tr>
@@ -935,7 +935,7 @@ <h2>6. Find the Correct v1.0 <code class="docutils literal notranslate"><span cl
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-<table id="table139799448997200" class="table-striped table-bordered table-condensed">
+<table id="table139736662306960" class="table-striped table-bordered table-condensed">
 <thead><tr><th>filename</th><th>date-obs</th><th>dkc-filename</th><th>dkc-useafter</th><th>dkc-activation</th></tr></thead>
 <thead><tr><th>str18</th><th>str10</th><th>str18</th><th>str10</th><th>str10</th></tr></thead>
 <tr><td>idv404axq_raw.fits</td><td>2019-07-29</td><td>3961719li_dkc.fits</td><td>2019-07-28</td><td>2019-09-09</td></tr>
@@ -957,7 +957,7 @@ <h2>6.1 Download the Correct <code class="docutils literal notranslate"><span cl
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-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>CRDS - INFO -  Symbolic context &#39;hst-operational&#39; resolves to &#39;hst_1121.pmap&#39;
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>CRDS - INFO -  Symbolic context &#39;hst-operational&#39; resolves to &#39;hst_1122.pmap&#39;
 CRDS - INFO -  Reorganizing 27 references from &#39;flat&#39; to &#39;flat&#39;
 CRDS - INFO -  Syncing explicitly listed files.
 CRDS - INFO -  0 errors
@@ -997,7 +997,7 @@ <h2>7. Download the v1.0 <code class="docutils literal notranslate"><span class=
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-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>CRDS - INFO -  Symbolic context &#39;hst-operational&#39; resolves to &#39;hst_1121.pmap&#39;
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>CRDS - INFO -  Symbolic context &#39;hst-operational&#39; resolves to &#39;hst_1122.pmap&#39;
 CRDS - INFO -  Reorganizing 27 references from &#39;flat&#39; to &#39;flat&#39;
 CRDS - INFO -  Syncing explicitly listed files.
 CRDS - INFO -  0 errors
@@ -1052,7 +1052,7 @@ <h2>8. Re-Inspect Image Header<a class="headerlink" href="#re-inspect-image-head
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-<table id="table139800077221712" class="table-striped table-bordered table-condensed">
+<table id="table139736662742224" class="table-striped table-bordered table-condensed">
 <thead><tr><th>file</th><th>date-obs</th><th>expstart</th><th>pctetab</th><th>drkcfile</th><th>pctecorr</th></tr></thead>
 <thead><tr><th>str18</th><th>str10</th><th>float64</th><th>str23</th><th>str23</th><th>str7</th></tr></thead>
 <tr><td>idv404axq_raw.fits</td><td>2019-07-29</td><td>58693.181643</td><td>iref$zcv2057mi_cte.fits</td><td>iref$3961719li_dkc.fits</td><td>PERFORM</td></tr>
@@ -1079,10 +1079,10 @@ <h2>9. Run <code class="docutils literal notranslate"><span class="pre">calwf3</
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-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>-rw-r--r-- 1 runner docker 168079680 Nov 17 20:53 idv404axq_flt.fits
--rw-r--r-- 1 runner docker 168079680 Nov 17 20:53 idv404axq_flc.fits
--rw-r--r-- 1 runner docker 168681600 Nov 17 20:54 idv404axq_v2.0_flc.fits
--rw-r--r-- 1 runner docker  34891200 Nov 17 20:54 idv404axq_raw.fits
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>-rw-r--r-- 1 runner docker 168079680 Nov 30 17:51 idv404axq_flt.fits
+-rw-r--r-- 1 runner docker 168079680 Nov 30 17:51 idv404axq_flc.fits
+-rw-r--r-- 1 runner docker 168681600 Nov 30 17:51 idv404axq_v2.0_flc.fits
+-rw-r--r-- 1 runner docker  34891200 Nov 30 17:51 idv404axq_raw.fits
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@@ -1115,7 +1115,7 @@ <h2>10. Inspect FLC Image Header<a class="headerlink" href="#inspect-flc-image-h
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-<table id="table139800077390160" class="table-striped table-bordered table-condensed">
+<table id="table139736662873680" class="table-striped table-bordered table-condensed">
 <thead><tr><th>file</th><th>pctetab</th><th>drkcfile</th><th>pctecorr</th><th>cal_ver</th><th>cte_name</th><th>cte_ver</th></tr></thead>
 <thead><tr><th>str18</th><th>str23</th><th>str23</th><th>str8</th><th>str19</th><th>str13</th><th>str3</th></tr></thead>
 <tr><td>idv404axq_flc.fits</td><td>iref$54l1347ei_cte.fits</td><td>iref$54n2022fi_dkc.fits</td><td>COMPLETE</td><td>3.6.2 (May-27-2021)</td><td>pixelCTE 2019</td><td>2.0</td></tr>
@@ -1230,11 +1230,12 @@ <h2>11.3 Display 50x50 Pixel Background Subsection<a class="headerlink" href="#d
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-<img alt="../../../_images/0515141a61fc9f30814226ac20bd11f18c7500abab7c7fecf9741b050a5e764c.png" src="../../../_images/0515141a61fc9f30814226ac20bd11f18c7500abab7c7fecf9741b050a5e764c.png" />
+<img alt="../../../_images/02c9e0fa65ec5d8db98bb66a5eb7f59ea0cb033f0de10b7b31cfe44b8aeacf54.png" src="../../../_images/02c9e0fa65ec5d8db98bb66a5eb7f59ea0cb033f0de10b7b31cfe44b8aeacf54.png" />
 </div>
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 <div style="text-align: left"> <strong> <font size ="4">Animated GIF of the v1.0 and v2.0 FLC image subsections: </font> </strong> </div>
-<img align="left" width="800" height="800" src="example/v1_v2_bkg.gif" alt="An animated gif blinking between a subsection of background sky using the v1.0 and V2.0 pixel-based CTE corrections. The v2.0 background appears smoother with less noise and pixel variations.">
+<!-- <img align="left" width="800" height="800" src="example/v1_v2_bkg.gif" alt="An animated gif blinking between a subsection of background sky using the v1.0 and V2.0 pixel-based CTE corrections. The v2.0 background appears smoother with less noise and pixel variations."> -->
+<p><img alt="An animated gif blinking between a subsection of background sky using the v1.0 and V2.0 pixel-based CTE corrections. The v2.0 background appears smoother with less noise and pixel variations." src="../../../_images/v1_v2_bkg.gif" /></p>
 <p><a id="bkgdist"></a></p>
 </section>
 <section id="pixel-distribution-of-background-subsections">
@@ -1271,7 +1272,7 @@ <h2>11.3.1 Pixel Distribution of Background Subsections<a class="headerlink" hre
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-<img alt="../../../_images/cdf1f1c2be9298669636982ac904c2fd037e9d8ffe478957d929c344a9c9d93f.png" src="../../../_images/cdf1f1c2be9298669636982ac904c2fd037e9d8ffe478957d929c344a9c9d93f.png" />
+<img alt="../../../_images/a37ddb9f9f91be6f8ff4d690cc6f92e7626d06956d56e6323b7e8883d37a7c85.png" src="../../../_images/a37ddb9f9f91be6f8ff4d690cc6f92e7626d06956d56e6323b7e8883d37a7c85.png" />
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 <p><a id="imgsub"></a></p>
@@ -1304,16 +1305,20 @@ <h2>11.4 Display Image Subsection<a class="headerlink" href="#display-image-subs
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-<img alt="../../../_images/166d0679081f8b926ad9da6085bb52bbb5bb3fd35c62592018c724e01ee86a7c.png" src="../../../_images/166d0679081f8b926ad9da6085bb52bbb5bb3fd35c62592018c724e01ee86a7c.png" />
+<img alt="../../../_images/ba1e54979ed9397a6f99f7f5fa8ce240b421dd71304a9da90c65ac19c3fc3d17.png" src="../../../_images/ba1e54979ed9397a6f99f7f5fa8ce240b421dd71304a9da90c65ac19c3fc3d17.png" />
 </div>
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 <div style="text-align: left"> <strong> <font size ="4">Animated GIF of the v1.0 and v2.0 FLC image subsections: </font> </strong> </div>
-<img align="left" width="975" height="975" src="example/v1_v2_subsection.gif"><p><a id="apphot"></a></p>
+<!-- <img align="left" width="975" height="975" src="example/v1_v2_subsection.gif"> -->
+<p><img alt="An animated GIF of the v1.0 and v2.0 FLC image subsections" src="../../../_images/v1_v2_subsection.gif" /></p>
+<p><a id="apphot"></a></p>
 </section>
 <section id="aperture-photometry">
 <h2>11.5 Aperture Photometry<a class="headerlink" href="#aperture-photometry" title="Permalink to this heading">#</a></h2>
 <p>To show the quantitative difference in the observed flux of sources between the v1.0 and v2.0 pixel-based CTE correction,<br> we perform aperture photometry on six stars of varying brightness within the image subsection above. Here, we display the <br> image subsection again with the apertures, annuli, and star labels overplotted. This subsection includes the first ~150 rows <br> of UVIS 1, which means all of these stars suffer the most CTE flux loss as they transfer 1900+ rows to the readout amplifier.</p>
-<img align="left" width="900" height="900" src="example/apphot_image.png"><p>First, we approximate the center x and y positions of the stars in the 4Kx4K science arrays, and create the apertures and <br> annuli using <code class="docutils literal notranslate"><span class="pre">photutils</span></code>. <br></p>
+<!-- <img align="left" width="900" height="900" src="example/apphot_image.png"> -->
+<p><img alt="Aperture photometry illustration" src="../../../_images/apphot_image.png" /></p>
+<p>First, we approximate the center x and y positions of the stars in the 4Kx4K science arrays, and create the apertures and <br> annuli using <code class="docutils literal notranslate"><span class="pre">photutils</span></code>. <br></p>
 <p>Then, we use <code class="docutils literal notranslate"><span class="pre">photutils</span></code> to measure the signal in each area and subtract the background values in the annuli from the <br>aperture sum values. We define a function named <code class="docutils literal notranslate"><span class="pre">get_flux()</span></code> to do this for us.</p>
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@@ -1419,7 +1424,7 @@ <h2>11.5 Aperture Photometry<a class="headerlink" href="#aperture-photometry" ti
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-<img alt="../../../_images/7261ccd23135bd6b2c2b12a58c96c5f14ff9f34adbc0823eb1b0423ce504dcf1.png" src="../../../_images/7261ccd23135bd6b2c2b12a58c96c5f14ff9f34adbc0823eb1b0423ce504dcf1.png" />
+<img alt="../../../_images/3612da94ddffafc43a9735f9e0929004b64ec1fcd106b9a2f75e49d89c5ea74e.png" src="../../../_images/3612da94ddffafc43a9735f9e0929004b64ec1fcd106b9a2f75e49d89c5ea74e.png" />
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 <p><a id="conclude"></a></p>