Merge pull request #145 from FDauphin/add_calwf3_recal_tvb

Add calwf3 recal tvb

notebooks/WFC3/calwf3_recalibration/README.md

@@ -1 +1,13 @@
 This Jupyter notebook provides `calwf3` reprocessing examples to improve calibrated WFC3/IR images affected by time-variable background (TVB). The notebook shows how to diagnose images with poor-quality ramp fits and rerun `calwf3` with the 'CRCORR' step turned off. This method is described as the 'Last-minus-first' technique [WFC3 ISR 2016-16](https://www.stsci.edu/files/live/sites/www/files/home/hst/instrumentation/wfc3/documentation/instrument-science-reports-isrs/_documents/2016/WFC3-2016-16.pdf). See Section 3.5.2 of the [WFC3 Data Handbook](https://hst-docs.stsci.edu/wfc3dhb) for more information.
+
+Dependencies:
+
+Install the necessary packages using the pre-requirements.sh and requirements.txt:
+
+    bash pre-requirements.sh
+    pip install -r requirements.txt
+
+If necessary, also install jupyter notebook:
+
+    pip install notebook
+

notebooks/WFC3/calwf3_recalibration/calwf3_recal_tvb.ipynb

@@ -52,7 +52,7 @@
     "<a id=\"imports\"></a>\n",
     "## 1. Imports\n",
     "\n",
-    "This notebook assumes you have created the virtual environment in [WFC3 Library's](https://github.com/spacetelescope/WFC3Library) installation instructions.\n",
+    "This notebook assumes you have installed the required libraries as described [here](https://github.com/spacetelescope/hst_notebooks/tree/main/notebooks/WFC3/calwf3_recalibration).\n",
     "\n",
     "We import:\n",
     "- *glob* for finding lists of files\n",
@@ -122,8 +122,9 @@
     "science_files = glob.glob('data/mastDownload/HST/*/*fits')\n",
     "\n",
     "for im in science_files:\n",
-    "    root = im.split('/')[-1]\n",
-    "    os.rename(im, './'+root)\n",
+    "    root = os.path.basename(im)\n",
+    "    new_path = os.path.join('.', root)\n",
+    "    os.rename(im, new_path)\n",
     "\n",
     "data_directory = './data'\n",
     "\n",
@@ -389,14 +390,14 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "os.mkdir('orig/')\n",
+    "os.makedirs('orig/', exist_ok=True)\n",
     "\n",
-    "for imas in glob.glob('ibohbf*_ima.fits'):\n",
-    "    shutil.move(imas, 'orig/')\n",
-    "for flts in glob.glob('ibohbf*_flt.fits'):\n",
-    "    shutil.move(flts, 'orig/') \n",
-    "for driz in glob.glob('ibohbf*_drz.fits'):\n",
-    "    shutil.move(driz, 'orig/')     "
+    "for file_pattern in ['ibohbf*_ima.fits', 'ibohbf*_flt.fits', 'ibohbf*_drz.fits']:\n",
+    "  for file in glob.glob(file_pattern):\n",
+    "    destination_path = os.path.join('orig', os.path.basename(file))\n",
+    "    if os.path.isfile(destination_path):\n",
+    "      os.remove(destination_path)\n",
+    "    shutil.move(file, destination_path)  "
    ]
   },
   {