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MRG: add skipmer sketching #159

Merged
merged 29 commits into from
Dec 27, 2024
Merged

MRG: add skipmer sketching #159

merged 29 commits into from
Dec 27, 2024
+268 −26

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bluegenes
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@bluegenes bluegenes commented Dec 17, 2024 •
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  • adds skipmer moltypes + test
  • add --genomes-only and --proteomes-only to urlsketch

bluegenes and others added 27 commits December 6, 2024 13:59
@bluegenes
make permits modifiable
5bf9113
@bluegenes
add permit option; use BuildCollection directly to avoid clone
9b258bd
@bluegenes
integrate multiselect, etc change from branchwater buildutils work
d2d90f0
@bluegenes
upd batch info to better reflect method
bd24b26
@bluegenes
fix #s
7ac3650
@bluegenes
try adding xz-utils
ae1bf4e
@bluegenes
clean up
bfd3c37
@bluegenes
try again
57dadd7
@bluegenes
another!
71d699f
@bluegenes
try pyo3 default
4df4fdd
@bluegenes
revert pyo3 version
075d798
@bluegenes
v3 cargo lock
3879514
@bluegenes
Merge branch 'main' into mod-permits
0d45ca9
@bluegenes
add skipmers; update as needed for core changes
6190609
@bluegenes
add skipmer tests
927916c
@bluegenes
Merge branch 'main' into mod-permits
9894545
@bluegenes
Merge branch 'mod-permits' into skipmer
c5708df
@bluegenes
Merge branch 'main' into mod-permits
33eaf83
@bluegenes
Merge branch 'main' into mod-permits
85a6694
@bluegenes
upd smash
e5407fe
@bluegenes
fix restart
bc6a499
@bluegenes
changes needed for zipfile fixes, buildcollection change
be43b73
@bluegenes
Merge branch 'main' into mod-permits
f9abbbd
@bluegenes
add n downloads to usage
fb70fb5
@bluegenes
Merge branch 'mod-permits' into skipmer
d0160a2
@bluegenes
commit cargo lock
189386a
@bluegenes
upd readme
319ab3b
@bluegenes bluegenes changed the title WIP: add skipmer sketching MRG: add skipmer sketching Dec 24, 2024
@bluegenes
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@ctb also ready for review

ctb
ctb approved these changes Dec 26, 2024
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👍

Base automatically changed from mod-permits to main December 27, 2024 01:57
@bluegenes bluegenes merged commit bdb7319 into main Dec 27, 2024
1 check passed
@bluegenes bluegenes deleted the skipmer branch December 27, 2024 02:09
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@ctb ctb ctb approved these changes

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@bluegenes @ctb