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bluegenes committed Apr 30, 2024
1 parent 6a66169 commit 8625186
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18 changes: 18 additions & 0 deletions .github/dependabot.yml
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version: 2
updates:
- package-ecosystem: pip
directory: "/"
schedule:
interval: weekly
open-pull-requests-limit: 10
- package-ecosystem: cargo
directory: "/"
schedule:
interval: weekly
allow:
- dependency-type: "direct"
open-pull-requests-limit: 10
- package-ecosystem: "github-actions"
directory: "/"
schedule:
interval: weekly
63 changes: 63 additions & 0 deletions .github/workflows/build-test.yml
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name: "maturin build"
on:
pull_request:
push:
branches: [latest]
jobs:
mamba:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0

- name: Install latest stable rust
uses: actions-rs/toolchain@v1
with:
toolchain: stable
override: true
components: rustfmt, clippy

- name: Run cargo fmt
uses: actions-rs/cargo@v1
with:
command: fmt
args: --all -- --check

- name: cache rust
uses: Swatinem/rust-cache@v2

- name: cache conda
uses: actions/cache@v4
env:
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key:
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}

- name: setup conda
uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca
with:
auto-update-conda: true
python-version: 3.11
channels: conda-forge,bioconda
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
mamba-version: "*"
activate-environment: sourmash_dev
auto-activate-base: false
use-only-tar-bz2: true

- name: install dependencies
shell: bash -l {0}
run: mamba install git compilers maturin pytest

- name: build
shell: bash -l {0}
run: make

- name: test
shell: bash -l {0}
run: pytest

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