WIP: Enable merged sigs, sequence range selection in urlsketch
#421
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name: "maturin build" | |
on: | |
pull_request: | |
push: | |
branches: [main] | |
jobs: | |
mamba: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: cache conda | |
uses: actions/cache@v4 | |
env: | |
CACHE_NUMBER: 1 | |
with: | |
path: ~/conda_pkgs_dir | |
key: | |
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
- name: cache rust | |
uses: Swatinem/rust-cache@v2 | |
- name: setup conda | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
python-version: 3.12 | |
channels: conda-forge,bioconda | |
miniforge-version: latest | |
use-mamba: true | |
mamba-version: "*" | |
activate-environment: sourmash_dev | |
auto-activate-base: false | |
# use-only-tar-bz2: true | |
- run: conda info | |
- run: conda list | |
- run: conda config --show | |
- run: mamba search rust | |
- name: install dependencies | |
shell: bash -l {0} | |
run: mamba install rust==1.75.0 | |
- name: install dependencies 2 | |
shell: bash -l {0} | |
run: mamba install compilers maturin pytest pandas liblzma-devel | |
- name: Run cargo fmt | |
run: cargo fmt --all -- --check --verbose | |
# - name: rust tests | |
# run: cargo test --verbose --no-fail-fast | |
- name: build | |
shell: bash -l {0} | |
run: make | |
- name: python tests | |
shell: bash -l {0} | |
run: pytest | |