WIP: debug multisigfile test

Cargo.toml

@@ -11,8 +11,9 @@ crate-type = ["cdylib"]
 [dependencies]
 pyo3 = { version = "0.22.5", features = ["extension-module", "anyhow"] }
 rayon = "1.10.0"
+sourmash = { git = "https://github.com/sourmash-bio/sourmash.git", branch = "debug_multisigfile", features = ["branchwater"] }
 serde = { version = "1.0.210", features = ["derive"] }
-sourmash = { version = "0.16.0", features = ["branchwater"] }
+#sourmash = { version = "0.16.0", features = ["branchwater"] }
 serde_json = "1.0.132"
 niffler = "2.4.0"
 log = "0.4.22"

src/python/tests/test_fastgather.py

@@ -310,8 +310,8 @@ def test_bad_against_3(runtmp, capfd):
     assert 'InvalidArchive' in captured.err
 
 
-@pytest.mark.xfail(reason="should work, bug")
-def test_against_multisigfile(runtmp, zip_against):
+#@pytest.mark.xfail(reason="should work, bug")
+def test_against_pathlist_multisigfile(runtmp, zip_against, indexed_against):
     # test against a sigfile that contains multiple sketches
     query = get_test_data('SRR606249.sig.gz')
     against_list = runtmp.output('against.txt')
@@ -327,6 +327,9 @@ def test_against_multisigfile(runtmp, zip_against):
     if zip_against:
         against_list = zip_siglist(runtmp, against_list, runtmp.output('against.zip'))
 
+    if indexed_against:
+        against_list = index_siglist(runtmp, against_list, runtmp.output('db'))
+
     g_output = runtmp.output('gather.csv')
     p_output = runtmp.output('prefetch.csv')