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Refactor: Use to_writer/from_reader across the codebase #6020

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Run time

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Job	Run time
nix (ubuntu-latest)	15m 8s
mamba (ubuntu-latest)	10m 34s
nix (macos-14)	11m 9s
mamba (macos-14)	7m 33s
pixi (ubuntu-latest)	9m 38s
pixi (macos-14)	7m 29s
	1h 1m 31s