This repository contains code used for the fly whole brain activity experiments and analysis.
Several files were contributed by Tongqiu Jia.
The file starting with A_ corresponds to the code used for the analysis in http://biorxiv.org/content/early/2015/12/10/033803
FIJIMacros folder includes Macro scripts for FIJI to process images. MatlabFiles folder has matlab scripts for each step of the analysis.
Summarize the pipeline
dFF_psf_KF_file A_ICAalaMelodic or A_AverageDifferencesMapsStimuli
Also used for Aimon S, Cheng KY, Gjorgjieva J, Grunwald Kadow IC. Global change in brain state during spontaneous and forced walk in Drosophila is composed of combined activity patterns of different neuron classes. Elife. 2023 Apr 17;12:e85202. doi: 10.7554/eLife.85202. Epub ahead of print. PMID: 37067152.