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feat: Allow bam input files #94

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fxwiegand
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This PR allows bam files as input via the fields bam_single or bam_paired in units.tsv.

@fxwiegand fxwiegand marked this pull request as draft May 29, 2024 07:35
@fxwiegand fxwiegand marked this pull request as ready for review May 29, 2024 08:05
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@johanneskoester johanneskoester merged commit 4a1f983 into snakemake-workflows:main Jun 5, 2024
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johanneskoester pushed a commit that referenced this pull request Jun 5, 2024
🤖 I have created a release *beep* *boop*
---


##
[2.6.0](v2.5.5...v2.6.0)
(2024-06-05)


### Features

* Allow bam input files
([#94](#94))
([4a1f983](4a1f983))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
dlaehnemann pushed a commit that referenced this pull request Jul 17, 2024
Just a quick PR to update the docs for the recent changes from #94.
dlaehnemann added a commit that referenced this pull request Aug 5, 2024
This PR makes the workflow handle missing bam columns introduced in #94
without throwing an error.

---------

Co-authored-by: David Laehnemann <[email protected]>
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2 participants