fix wrong paths another time

snakemake-workflows · May 24, 2024 · e96e3c8 · e96e3c8
1 parent 1ff92de
commit e96e3c8
Showing 1 changed file with 9 additions and 3 deletions.
diff --git a/workflow/rules/datavzrd.smk b/workflow/rules/datavzrd.smk
@@ -14,7 +14,9 @@ rule sort_spia:
 rule render_datavzrd_config_spia:
  input:
  template=workflow.source_path("../resources/datavzrd/spia-template.yaml"),
- vega_circle="workflow/resources/custom_vega_plots/circle_diagram_de_genes.json",
+ vega_circle=workflow.source_path(
+ "../resources/custom_vega_plots/circle_diagram_de_genes.json"
+ ),
  spia_table="results/tables/pathways/{model}.pathways_sorted.tsv",
  output:
  "results/datavzrd/spia/{model}.yaml",
@@ -76,8 +78,12 @@ rule render_datavzrd_config_go_enrichment:
  template=workflow.source_path(
  "../resources/datavzrd/go-enrichment-template.yaml"
  ),
- vega_circle="workflow/resources/custom_vega_plots/circle_diagram_genes.json",
- vega_waterfall="workflow/resources/custom_vega_plots/waterfall_plot_study_items.json",
+ vega_circle=workflow.source_path(
+ "../resources/custom_vega_plots/circle_diagram_genes.json"
+ ),
+ vega_waterfall=workflow.source_path(
+ "../resources/custom_vega_plots/waterfall_plot_study_items.json"
+ ),
  enrichment="results/tables/go_terms/{model}.go_term_enrichment.gene_fdr_{gene_fdr}.go_term_sig_study_fdr{go_term_fdr}.tsv",
  significant_terms="results/tables/go_terms/{model}.go_term_enrichment.gene_fdr_{gene_fdr}.go_term_fdr_{go_term_fdr}.sig_terms.tsv",
  genes_representative="results/tables/diffexp/{model}.genes-representative.diffexp.tsv",