try including some error messaging when all mirrors fail

snakemake-workflows · Oct 30, 2023 · a1a58f9 · a1a58f9
1 parent 57ca94e
commit a1a58f9
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/workflow/scripts/get-transcript-info.R b/workflow/scripts/get-transcript-info.R
@@ -36,7 +36,9 @@ while (class(mart)[[1]] != "Mart") {
  str_c(
  "Have tried all 4 available Ensembl biomaRt mirrors ",
  rounds,
- " times. You might have a connection problem, or no mirror is responsive."
+ " times. You might have a connection problem, or no mirror is responsive.\n",
+ "The last error message was:\n",
+ e
  )
  )
  }
@@ -194,4 +196,4 @@ if ("transcript_mane_select" %in% colnames(other_annotations)) {
 write_tsv(
  other_annotations,
  snakemake@output[[2]]
-)
+)