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unpin snakemake github action to use newest, update super linter acti…
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…on to v5
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dlaehnemann authored Aug 15, 2023
1 parent 6db96d4 commit 38fe6d2
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ jobs:
steps:
- uses: actions/checkout@v1
- name: Formatting
uses: github/super-linter@v4
uses: github/super-linter@v5
env:
VALIDATE_ALL_CODEBASE: false
DEFAULT_BRANCH: main
Expand All @@ -54,7 +54,7 @@ jobs:
steps:
- uses: actions/checkout@v1
- name: Linting
uses: snakemake/snakemake-github-action@v1.22.0
uses: snakemake/snakemake-github-action@v1
with:
directory: .test
snakefile: workflow/Snakefile
Expand All @@ -73,7 +73,7 @@ jobs:
submodules: recursive

- name: Test workflow
uses: snakemake/snakemake-github-action@v1.23.0
uses: snakemake/snakemake-github-action@v1
with:
directory: .test
snakefile: workflow/Snakefile
Expand All @@ -92,7 +92,7 @@ jobs:
submodules: recursive

- name: Test 3-prime-workflow
uses: snakemake/snakemake-github-action@v1.23.0
uses: snakemake/snakemake-github-action@v1
with:
directory: .test/3-prime-config
snakefile: workflow/Snakefile
Expand All @@ -101,7 +101,7 @@ jobs:
# TODO: add some kind of test mode to report generation which does not really try to include
# results.
# - name: Test report
# uses: snakemake/snakemake-github-action@v1.22.0
# uses: snakemake/snakemake-github-action@v1
# with:
# directory: .test
# snakefile: workflow/Snakefile
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