fix: Fix meta comparison model and label path (#111)

This PR fixes the paths of model and label paths for meta comparisons.
snakemake-workflows · Aug 29, 2024 · 27b9cb1 · 27b9cb1
1 parent 787376d
commit 27b9cb1
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/workflow/rules/meta_comparisons.smk b/workflow/rules/meta_comparisons.smk
@@ -3,7 +3,7 @@ rule meta_compare_diffexp:
  expand(
  "results/sleuth/diffexp/{model}.genes-representative.diffexp.rds",
  model=lookup(
- dpath="meta_comparisons/comparisons/{meta_comp}/items/*/*",
+ dpath="meta_comparisons/comparisons/{meta_comp}/items/*",
  within=config,
  ),
  ),
@@ -14,7 +14,7 @@ rule meta_compare_diffexp:
  notebook="logs/meta_compare_diffexp/{meta_comp}.ipynb",
  params:
  labels=lookup(
- dpath="meta_comparisons/comparisons/{meta_comp}/items/*",
+ dpath="meta_comparisons/comparisons/{meta_comp}/items",
  within=config,
  ),
  conda:
@@ -28,7 +28,7 @@ rule meta_compare_enrichment:
  expand(
  "results/tables/go_terms/{model}.go_term_enrichment.gene_fdr_{gene_fdr}.go_term_sig_study_fdr_{go_term_fdr}.tsv",
  model=lookup(
- dpath="meta_comparisons/comparisons/{meta_comp}/items/*/*",
+ dpath="meta_comparisons/comparisons/{meta_comp}/items/*",
  within=config,
  ),
  gene_fdr=str(config["enrichment"]["goatools"]["fdr_genes"]).replace(
@@ -45,7 +45,7 @@ rule meta_compare_enrichment:
  notebook="logs/meta_compare_enrichment/{meta_comp}.ipynb",
  params:
  labels=lookup(
- dpath="meta_comparisons/comparisons/{meta_comp}/items/*",
+ dpath="meta_comparisons/comparisons/{meta_comp}/items",
  within=config,
  ),
  conda:
@@ -59,7 +59,7 @@ rule meta_compare_pathways:
  expand(
  "results/tables/pathways/{model}.pathways.tsv",
  model=lookup(
- dpath="meta_comparisons/comparisons/{meta_comp}/items/*/*",
+ dpath="meta_comparisons/comparisons/{meta_comp}/items/*",
  within=config,
  ),
  ),
@@ -70,7 +70,7 @@ rule meta_compare_pathways:
  notebook="logs/meta_compare_pathways/{meta_comp}.ipynb",
  params:
  labels=lookup(
- dpath="meta_comparisons/comparisons/{meta_comp}/items/*",
+ dpath="meta_comparisons/comparisons/{meta_comp}/items",
  within=config,
  ),
  conda: