fix: fix vembrane aux (#223)

snakemake-workflows · Apr 17, 2023 · 245366c · 245366c
1 parent e06d0d1
commit 245366c
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -685,7 +685,7 @@ def get_annotation_filter_expression(wildcards):
 
 def get_annotation_filter_aux(wildcards):
  return [
- f"--aux {name} {path}"
+ f"--aux {name}={path}"
  for filter in get_annotation_filter_names(wildcards)
  for name, path in get_filter_aux_entries(filter).items()
  ]
@@ -720,7 +720,7 @@ def get_candidate_filter_aux():
  return ""
  else:
  return [
- f"--aux {name} {path}"
+ f"--aux {name}={path}"
  for name, path in get_filter_aux_entries("candidates").items()
  ]