small changes

smith-chem-wisc · Apr 23, 2018 · 7f8d9d7 · 7f8d9d7
1 parent abf031c
commit 7f8d9d7
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/ProteoformSuiteGUI/DisplayObjects/DisplayQuantitativeValues.cs b/ProteoformSuiteGUI/DisplayObjects/DisplayQuantitativeValues.cs
@@ -51,7 +51,8 @@ public string Theoretical
  {
  get
  {
- return proteoform.linked_proteoform_references != null ? proteoform.linked_proteoform_references.First().accession.Split('_')[0] : "";
+ return proteoform as TopDownProteoform != null ? proteoform.accession.Split('_')[0] :
+ proteoform.linked_proteoform_references != null ? proteoform.linked_proteoform_references.First().accession.Split('_')[0] : "";
  }
  }
 

diff --git a/ProteoformSuiteInternal/StatisticalAnalysis/Log2FoldChangeAnalysis.cs b/ProteoformSuiteInternal/StatisticalAnalysis/Log2FoldChangeAnalysis.cs
@@ -15,7 +15,7 @@ public class Log2FoldChangeAnalysis
  public Dictionary<Tuple<string, string>, double> conditionBiorep_stdevLog2I { get; set; } = new Dictionary<Tuple<string, string>, double>(); // used to impute bft-intensities
  public Dictionary<Tuple<string, string>, double> conditionBiorepIntensitySums { get; set; } = new Dictionary<Tuple<string, string>, double>(); // used to normalize columns
  public double benjiHoch_fdr { get; set; } = 0.05;
- public double minFoldChange { get; set; } = 2.0;
+ public double minFoldChange { get; set; } = 1.0;
  public List<ProteinWithGoTerms> inducedOrRepressedProteins { get; set; } = new List<ProteinWithGoTerms>(); // This is the list of proteins from proteoforms that underwent significant induction or repression
  public GoAnalysis GoAnalysis { get; set; } = new GoAnalysis();
  public QuantitativeDistributions QuantitativeDistributions { get; set; }