Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Gptmd approach update #2419

Open
wants to merge 28 commits into
base: master
Choose a base branch
from
Open

Gptmd approach update #2419

wants to merge 28 commits into from

Commits on Aug 26, 2024

  1. update mzlib nuget package to 551

    @trishorts
    trishorts committed Aug 26, 2024
    Configuration menu
    Copy the full SHA
    bd5aefc View commit details
    Browse the repository at this point in the history

Commits on Sep 5, 2024

  1. Merge remote-tracking branch 'upstream/master'

    @trishorts
    trishorts committed Sep 5, 2024
    Configuration menu
    Copy the full SHA
    d60e32e View commit details
    Browse the repository at this point in the history

Commits on Sep 18, 2024

  1. use psms score to revise what ptms are added in gptmd

    @trishorts
    trishorts committed Sep 18, 2024
    Configuration menu
    Copy the full SHA
    5e65835 View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2024

  1. now deals w/ variants

    @trishorts
    trishorts committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    dd2cbfa View commit details
    Browse the repository at this point in the history

  2. fix unit testts

    @trishorts
    trishorts committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    7a7dad6 View commit details
    Browse the repository at this point in the history

  3. Merge remote-tracking branch 'upstream/master' into gptmdApproachUpdate

    @trishorts
    trishorts committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    22fb336 View commit details
    Browse the repository at this point in the history

  4. unused lines

    @trishorts
    trishorts committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    8245a0e View commit details
    Browse the repository at this point in the history

  5. load files in background

    @trishorts
    trishorts committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    ce6c4e1 View commit details
    Browse the repository at this point in the history

Commits on Sep 20, 2024

  1. add parallelization and eliminate pep

    @trishorts
    trishorts committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    ef44e03 View commit details
    Browse the repository at this point in the history

  2. fix unit tests

    @trishorts
    trishorts committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    f33313b View commit details
    Browse the repository at this point in the history

  3. yo

    @trishorts
    trishorts committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    5a3445b View commit details
    Browse the repository at this point in the history

  4. fix those unit tests

    @trishorts
    trishorts committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    2dcc22c View commit details
    Browse the repository at this point in the history

  5. fix unit test

    @trishorts
    trishorts committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    b7371d0 View commit details
    Browse the repository at this point in the history

Commits on Sep 23, 2024

  1. test gptmd DissociationType Autodetect

    @trishorts
    trishorts committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    67aa1d2 View commit details
    Browse the repository at this point in the history

Commits on Sep 24, 2024

  1. gptmd test mod before variant

    @trishorts
    trishorts committed Sep 24, 2024
    Configuration menu
    Copy the full SHA
    bf0401d View commit details
    Browse the repository at this point in the history

  2. new test

    @trishorts
    trishorts committed Sep 24, 2024
    Configuration menu
    Copy the full SHA
    c44a719 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'master' into gptmdApproachUpdate

    @trishorts
    trishorts authored Sep 24, 2024
    Configuration menu
    Copy the full SHA
    40abab6 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'master' into gptmdApproachUpdate

    @trishorts
    trishorts authored Sep 24, 2024
    Configuration menu
    Copy the full SHA
    0646bb4 View commit details
    Browse the repository at this point in the history

Commits on Sep 27, 2024

  1. delete unreachable code

    @trishorts
    trishorts committed Sep 27, 2024
    Configuration menu
    Copy the full SHA
    96268d0 View commit details
    Browse the repository at this point in the history

  2. unit test for xcorr process spectra and matched ion with unknown mass

    @trishorts
    trishorts committed Sep 27, 2024
    Configuration menu
    Copy the full SHA
    63c6fff View commit details
    Browse the repository at this point in the history

  3. Test MatchFragmentIons when scan has no peaks

    @trishorts
    trishorts committed Sep 27, 2024
    Configuration menu
    Copy the full SHA
    71c2274 View commit details
    Browse the repository at this point in the history

  4. test gptmd task with contaminant database

    @trishorts
    trishorts committed Sep 27, 2024
    Configuration menu
    Copy the full SHA
    46f902e View commit details
    Browse the repository at this point in the history

  5. return missing comments

    @trishorts
    trishorts committed Sep 27, 2024
    Configuration menu
    Copy the full SHA
    cf83389 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'gptmdApproachUpdate' of https://github.com/trishorts/Me… 

    …taMorpheus into gptmdApproachUpdate
    @trishorts
    trishorts committed Sep 27, 2024
    Configuration menu
    Copy the full SHA
    aed2aba View commit details
    Browse the repository at this point in the history

  7. Merge branch 'master' into gptmdApproachUpdate

    @trishorts
    trishorts authored Sep 27, 2024
    Configuration menu
    Copy the full SHA
    388cc0b View commit details
    Browse the repository at this point in the history

Commits on Sep 30, 2024

  1. more unit test coverage for modification analysis engine

    @trishorts
    trishorts committed Sep 30, 2024
    Configuration menu
    Copy the full SHA
    04c3ed8 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'gptmdApproachUpdate' of https://github.com/trishorts/Me… 

    …taMorpheus into gptmdApproachUpdate
    @trishorts
    trishorts committed Sep 30, 2024
    Configuration menu
    Copy the full SHA
    8d48e53 View commit details
    Browse the repository at this point in the history

Commits on Oct 3, 2024

  1. Merge branch 'master' into gptmdApproachUpdate

    @trishorts
    trishorts authored Oct 3, 2024
    Configuration menu
    Copy the full SHA
    51b1c58 View commit details
    Browse the repository at this point in the history