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@slash-segmentation

SLASH (System for Large-scale Automatic Segmentation utilizing High-performance computing techniques)

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  1. open-3d-viewer open-3d-viewer Public

    WebGL-based 3D object viewer with instant search - updated for cells

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  2. objconverter objconverter Public

    Compresses OBJ+MTL files to UTF8+JS for use with WebGL

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  3. livewire livewire Public

    Implementation of the livewire algorithm that has speed and quality of results.

    C++ 7 6

  4. postprocess-chm-output postprocess-chm-output Public

    Scripts for the 3D post-processing of segmented image stacks

    MATLAB 2 1

  5. modelviewer modelviewer Public

    3D Model Viewer - WebGL and Database-Driven

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  6. CHM CHM Public

    Cascaded Hierarchical Model Automatic Segmentation Algorithm

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Repositories

Showing 10 of 33 repositories
  • CCDB_ID_Generator_2021 Public

    Archive data and store metadata. Also generate the microscopy ID

    slash-segmentation/CCDB_ID_Generator_2021’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jul 1, 2021
  • PyCHM Public

    Cascaded Hierarchical Model Automatic Segmentation Algorithm in Python

    slash-segmentation/PyCHM’s past year of commit activity
    Python 0 0 1 0 Updated May 30, 2018
  • CHM Public

    Cascaded Hierarchical Model Automatic Segmentation Algorithm

    slash-segmentation/CHM’s past year of commit activity
    Shell 0 BSD-2-Clause 0 4 0 Updated May 30, 2018
  • segtools Public

    Contains scripts to assist with the segmentation of EM data

    slash-segmentation/segtools’s past year of commit activity
    Python 0 1 1 0 Updated May 23, 2018
  • geoEM Public

    Geometry analysis tools for segmented EM data

    slash-segmentation/geoEM’s past year of commit activity
    C 0 0 0 0 Updated Apr 25, 2018
  • CIL_Public_Data_JSON Public

    This repository contains all CIL public annotation metadata in the JSON format.

    slash-segmentation/CIL_Public_Data_JSON’s past year of commit activity
    0 2 0 1 Updated Apr 17, 2018
  • mrcfileworkflow Public

    MRC File Workflow validates a MRC file

    slash-segmentation/mrcfileworkflow’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 29, 2017
  • chmimagedatasetworkflow Public

    CHM Image dataset Workflow

    slash-segmentation/chmimagedatasetworkflow’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 29, 2017
  • segmentertiledimage Public

    Generates tiled images from Single Slice CHM image dataset workflow output

    slash-segmentation/segmentertiledimage’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 29, 2017
  • chmtrainingdatasetworkflow Public

    Kepler workflow that verifies data passed to it is in valid structure for CHM Train Workflow

    slash-segmentation/chmtrainingdatasetworkflow’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 29, 2017
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