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[python] Drop support for Python 3.8 (EOL 2024/10) #2141

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johnkerl opened this issue Feb 14, 2024 · 4 comments
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[python] Drop support for Python 3.8 (EOL 2024/10) #2141

johnkerl opened this issue Feb 14, 2024 · 4 comments

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@johnkerl
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johnkerl commented Feb 14, 2024

Split out from #1849, in particular #1849 (comment), as requested by @bkmartinjr.

Needs deprecation pre-work in various packages/organizations that depend on TileDB-SOMA. Not for immediate implementation; a longer-term tracking issue.

sc-41048

@johnkerl
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See also #2282 for two warnings we can get rid of once we drop 3.8 support

@johnkerl johnkerl changed the title [python] Drop support for Python 3.8 [python] Drop support for Python 3.8 [long-term tracker] Apr 8, 2024
@johnkerl johnkerl removed the blocked label Sep 23, 2024
@johnkerl johnkerl changed the title [python] Drop support for Python 3.8 [long-term tracker] [python] Drop support for Python 3.8 (EOL 2024/10) Sep 23, 2024
@johnkerl johnkerl closed this as completed Oct 7, 2024
@johnkerl johnkerl reopened this Oct 7, 2024
@johnkerl
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johnkerl commented Oct 7, 2024

We also need to handle these:

FutureWarning: SparseDataset is deprecated and will be removed in late 2024. It has been replaced by the public classes CSRDataset and CSCDataset.

For instance checks, use `isinstance(X, (anndata.experimental.CSRDataset, anndata.experimental.CSCDataset))` instead.

cc @jp-dark

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johnkerl commented Oct 7, 2024

See also #1785

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johnkerl commented Oct 7, 2024

Re-closing; #1785 is open and suffices

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