update GHA, repo info

.github/workflows/python-tiledbsoma-ml.yml

@@ -1,19 +1,11 @@
-name: python-tiledbsoma-ml
+name: python-tiledbsoma-ml CI
 
 on:
  pull_request:
  branches: ["*"]
- paths:
- - "!**"
- - "other_packages/python/tiledbsoma_ml/**"
- - ".github/workflows/python-tiledbsoma-ml.yml"
 
  push:
  branches: [main]
- paths:
- - "!**"
- - "other_packages/python/tiledbsoma_ml/**"
- - ".github/workflows/python-tiledbsoma-ml.yml"
 
  workflow_dispatch:
 
@@ -44,40 +36,22 @@ jobs:
  strategy:
  fail-fast: false
  matrix:
- python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+ python-version: ["3.9", "3.10", "3.11", "3.12"]
  steps:
  - uses: actions/checkout@v4
 
  - uses: actions/setup-python@v5
  with:
  python-version: ${{ matrix.python-version }}
  cache: pip
- cache-dependency-path: python-spec/requirements-py${{ matrix.python-version }}.txt
 
  - name: Install prereqs
- working-directory: ./other_packages/python/tiledbsoma_ml/
  run: |
  pip install --upgrade pip wheel pytest pytest-cov setuptools
  pip install .
 
  - name: Run tests
- run: |
- PYTHONPATH=$(pwd)/other_packages/python/tiledbsoma_ml python -m pytest \
- --cov=other_packages/python/tiledbsoma_ml/src \
- --cov-report=xml other_packages/python/tiledbsoma_ml/tests \
- -v
-
- # - name: Report coverage to Codecov
- # if: ${{ matrix.python-version == '3.11' }}
- # uses: codecov/codecov-action@v4
- # with:
- # flags: python
- # # Although Codecov isn't supposed to require an auth token for public repos like this one,
- # # the uploader can be unreliable without one; see
- # # https://github.com/codecov/codecov-action/issues/557#issuecomment-1216749652
- # # As of this writing (8 Nov 2022) the CODECOV_TOKEN was generated by @aaronwolen in his
- # # Codecov settings page for this repo, then filled into the GitHub Actions secrets.
- # token: ${{ secrets.CODECOV_TOKEN }}
+ run: pytest -v --cov=src --cov-report=xml tests
 
  build:
  # for now, just do a test build to ensure that it works
@@ -90,7 +64,6 @@ jobs:
  python-version: "3.11"
 
  - name: Do build
- working-directory: ./other_packages/python/tiledbsoma_ml/
  run: |
  pip install --upgrade build pip wheel setuptools setuptools-scm
  python -m build .

pyproject.toml

@@ -47,9 +47,9 @@ classifiers = [
 ]
 
 [project.urls]
-Repository = "https://github.com/single-cell-data/TileDB-SOMA.git"
-Issues = "https://github.com/single-cell-data/TileDB-SOMA/issues"
-Changelog = "https://github.com/single-cell-data/TileDB-SOMA/blob/main/CHANGELOG.md"
+Repository = "https://github.com/TileDB-Inc/TileDB-SOMA-ML.git"
+Issues = "https://github.com/TileDB-Inc/TileDB-SOMA-ML/issues"
+Changelog = "https://github.com/TileDB-Inc/TileDB-SOMA-ML/blob/main/CHANGELOG.md"
 
 [tool.setuptools.dynamic]
 version = {attr = "tiledbsoma_ml.__version__"}