Skip to content

Climate change effects on herbivorous invertebrates of the Atlantic

Notifications You must be signed in to change notification settings

silasprincipe/herbinv

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

32 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Modeling the Species Distribution of Sea Urchins in the Western Atlantic

Introduction

This project assessed how climate change will impact the distribution of three key species of sea urchins in the Western Atlantic. This was done through SDMs produced using LGCP models under a Bayesian framework. For more details, reader is referred to the publication “A thorny future for sea urchins in the Tropical Western Atlantic” (under review). All codes and data used in the study are available in this folder, except original climatic layers, which are available online.

Interactive results

An interactive version of the results of this work is availabe at silasprincipe.github.io/herbinv

Files included

data: all data used in the study
env: environmental data
lyva: Lytechinus variegatus data
eclu: Echinometra lucunter data
trve: Tripneustes ventricosus data
sst_limits: SST data for the thermal limits part codes: all codes used in the study
functions: all functions that were used either directly or as support in the study gis: shapefiles

Codes

  • data_*: data download and preparing
  • prep_*: prepare data (environmental variables)
  • lgcp_prepare_data: prepare all data necessary for fitting the LGCP model through INLA
  • lgcp_model_*: models for each species
  • plot_*: produce figures
  • sst_*: codes used for producing the mechanistic model or for estimating thermal limits
  • supp_*: supplementary analysis

Related repositories


Please, contact us if you have any questions on how to use the codes.

About

Climate change effects on herbivorous invertebrates of the Atlantic

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages