Update coverage-local.yml #16

	name: R Package CI

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout code
	uses: actions/checkout@v2

	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: 4.1 # You can change this to the R version you need

	- name: Cache C++ and R dependencies
	uses: actions/cache@v2
	with:
	path: \|
	~/.cache/R
	~/.local/share/R
	key: dependencies-${{ runner.os }}-${{ hashFiles('**/DESCRIPTION') }}
	restore-keys: \|
	dependencies-${{ runner.os }}-

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y libudunits2-dev libgdal-dev


	- name: Install dependencies
	run: \|
	R -e 'install.packages("remotes")'
	R -e 'remotes::install_deps(dependencies = TRUE)'

	- name: Install dependencies for covr and testthat
	run: R -e 'install.packages(c("covr", "testthat"), dependencies = TRUE)'

	- name: Run tests and calculate coverage
	run: \|
	echo "Current working directory: $(pwd)"
	R -e 'library(covr); covr::package_coverage(coverage_file = "coverage.xml")'


	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	coverage_reports: ${{ github.workspace }}/coverage.xml

	- name: Cleanup
	run: \|
	R -e 'remove.packages("remotes")'

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