Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Boost lib connect error? any one have solve it? #43

Open
milkcookie opened this issue Mar 23, 2018 · 0 comments
Open

Boost lib connect error? any one have solve it? #43

milkcookie opened this issue Mar 23, 2018 · 0 comments

Comments

@milkcookie
Copy link

Making all in src/include/gtools
make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' ar crv libJgtools.a N50.o ChromInterval.o HumanGenome.o CopyNumberProfile.o FileParsers.o SAMStepper.o; mv libJgtools.a .. a - N50.o a - ChromInterval.o a - HumanGenome.o a - CopyNumberProfile.o a - FileParsers.o a - SAMStepper.o make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools'
Making all in src/include/markov
make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' ar crv libJmarkov.a SymbolSet.o WDAG.o MarkovModel.o MarkovChain.o HMM.o; mv libJmarkov.a .. a - SymbolSet.o a - WDAG.o a - MarkovModel.o a - MarkovChain.o a - HMM.o make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov'
Making all in src/include
make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' make[1]: Nothing to be done for all'.
make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' Making all in src make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src'
make all-am
make[2]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -static -lz -lpthread -Linclude -lJtime -lJgtools -lJmarkov -L/public1/home/stu_yanhanso libtool: link: g++ -g -O2 -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boost_1_61_0//lib -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boo make[2]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src'
make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' Lachesis-ChromLinkMatrix.o: In function AssertFilesExist(std::vector<std::string, std::allocatorstd::string > const&)':
/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function LoadNonDeNovoCLMsFromSAM(std::string const&, std::vector<ChromLinkMatrix*, std::allocator<ChromLinkMatri
x*> >)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function ChromLinkMatrix::ReadFile(std::string const&)':
/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function GenomeLinkMatrix::LoadFromSAM(std::string const&, std::vector<int, std::allocator > const&)':
/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function GenomeLinkMatrix::LoadFromSAMDeNovo(std::vector<std::string, std::allocatorstd::string > const&)':
/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o:/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: more undefined refer ences to boost::filesystem::detail::status(boost::filesystem::path const&, boost::system::error_code*)' followcollect2: error: ld returned 1 exit status
make[2]: *** [Lachesis] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant