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Making all in src/include/gtools make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' ar crv libJgtools.a N50.o ChromInterval.o HumanGenome.o CopyNumberProfile.o FileParsers.o SAMStepper.o; mv libJgtools.a .. a - N50.o a - ChromInterval.o a - HumanGenome.o a - CopyNumberProfile.o a - FileParsers.o a - SAMStepper.o make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' Making all in src/include/markov make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' ar crv libJmarkov.a SymbolSet.o WDAG.o MarkovModel.o MarkovChain.o HMM.o; mv libJmarkov.a .. a - SymbolSet.o a - WDAG.o a - MarkovModel.o a - MarkovChain.o a - HMM.o make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' Making all in src/include make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' make[1]: Nothing to be done for all'. make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' Making all in src make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' make all-am make[2]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -static -lz -lpthread -Linclude -lJtime -lJgtools -lJmarkov -L/public1/home/stu_yanhanso libtool: link: g++ -g -O2 -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boost_1_61_0//lib -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boo make[2]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' Lachesis-ChromLinkMatrix.o: In function AssertFilesExist(std::vector<std::string, std::allocatorstd::string > const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function LoadNonDeNovoCLMsFromSAM(std::string const&, std::vector<ChromLinkMatrix*, std::allocator<ChromLinkMatri x*> >)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function ChromLinkMatrix::ReadFile(std::string const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function GenomeLinkMatrix::LoadFromSAM(std::string const&, std::vector<int, std::allocator > const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function GenomeLinkMatrix::LoadFromSAMDeNovo(std::vector<std::string, std::allocatorstd::string > const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o:/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: more undefined refer ences to boost::filesystem::detail::status(boost::filesystem::path const&, boost::system::error_code*)' followcollect2: error: ld returned 1 exit status make[2]: *** [Lachesis] Error 1 make[1]: *** [all] Error 2 make: *** [all-recursive] Error 1
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' ar crv libJgtools.a N50.o ChromInterval.o HumanGenome.o CopyNumberProfile.o FileParsers.o SAMStepper.o; mv libJgtools.a .. a - N50.o a - ChromInterval.o a - HumanGenome.o a - CopyNumberProfile.o a - FileParsers.o a - SAMStepper.o make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' ar crv libJmarkov.a SymbolSet.o WDAG.o MarkovModel.o MarkovChain.o HMM.o; mv libJmarkov.a .. a - SymbolSet.o a - WDAG.o a - MarkovModel.o a - MarkovChain.o a - HMM.o make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' make[1]: Nothing to be done for
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' Making all in src make[1]: Entering directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -static -lz -lpthread -Linclude -lJtime -lJgtools -lJmarkov -L/public1/home/stu_yanhanso libtool: link: g++ -g -O2 -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boost_1_61_0//lib -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boo make[2]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' Lachesis-ChromLinkMatrix.o: In function
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o:/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: more undefined refer ences to
The text was updated successfully, but these errors were encountered:
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Making all in src/include/gtools
make[1]: Entering directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' ar crv libJgtools.a N50.o ChromInterval.o HumanGenome.o CopyNumberProfile.o FileParsers.o SAMStepper.o; mv libJgtools.a .. a - N50.o a - ChromInterval.o a - HumanGenome.o a - CopyNumberProfile.o a - FileParsers.o a - SAMStepper.o make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools'Making all in src/include/markov
make[1]: Entering directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' ar crv libJmarkov.a SymbolSet.o WDAG.o MarkovModel.o MarkovChain.o HMM.o; mv libJmarkov.a .. a - SymbolSet.o a - WDAG.o a - MarkovModel.o a - MarkovChain.o a - HMM.o make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov'Making all in src/include
make[1]: Entering directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' make[1]: Nothing to be done for
all'.make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' Making all in src make[1]: Entering directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src'make all-am
make[2]: Entering directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -static -lz -lpthread -Linclude -lJtime -lJgtools -lJmarkov -L/public1/home/stu_yanhanso libtool: link: g++ -g -O2 -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boost_1_61_0//lib -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boo make[2]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src'make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' Lachesis-ChromLinkMatrix.o: In function
AssertFilesExist(std::vector<std::string, std::allocatorstd::string > const&)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function
LoadNonDeNovoCLMsFromSAM(std::string const&, std::vector<ChromLinkMatrix*, std::allocator<ChromLinkMatrix*> >)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function
ChromLinkMatrix::ReadFile(std::string const&)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function
GenomeLinkMatrix::LoadFromSAM(std::string const&, std::vector<int, std::allocator > const&)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function
GenomeLinkMatrix::LoadFromSAMDeNovo(std::vector<std::string, std::allocatorstd::string > const&)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o:/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: more undefined refer ences to
boost::filesystem::detail::status(boost::filesystem::path const&, boost::system::error_code*)' followcollect2: error: ld returned 1 exit statusmake[2]: *** [Lachesis] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
The text was updated successfully, but these errors were encountered: