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Lachesis: Lachesis.cc:158: void LachesisOrdering(const RunParams&): Assertion `(int) clusters.size() >= run_params._cluster_N' failed. #42

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rahmanYI opened this issue Dec 22, 2017 · 3 comments
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Lachesis: Lachesis.cc:158: void LachesisOrdering(const RunParams&): Assertion `(int) clusters.size() >= run_params._cluster_N' failed. #42

rahmanYI opened this issue Dec 22, 2017 · 3 comments

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@rahmanYI
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Lachesis: Lachesis.cc:158: void LachesisOrdering(const RunParams&): Assertion `(int) clusters.size() >= run_params._cluster_N' failed.
@MRCmashroom
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hi YI Are you salving this problam?

@bhagya-ct
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Hello,

ran into the same problem, any solution?

@burnsro
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burnsro commented Jun 28, 2018

It isn't finding 23 "chromosomes"/clusters of contigs, in your HiC data which is the default setting in the ini file. If you have an idea of the chromosome number you expect, change that from the default number of 23 in the ini file

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@burnsro @bhagya-ct @rahmanYI @MRCmashroom