Fix flake8 errors

sgkit-dev · Sep 30, 2024 · 61ef3a4 · 61ef3a4
1 parent ac2fe64
commit 61ef3a4
Show file tree

Hide file tree

Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/sgkit/tests/io/vcf/test_vcf_writer_utils.py b/sgkit/tests/io/vcf/test_vcf_writer_utils.py
@@ -490,5 +490,5 @@ def test_interleave_speed():
 
  end = time.time()
  print(f"bytes written: {bytes_written}")
- print(f"duration: {end-start}")
- print(f"speed: {bytes_written/(1000000*(end-start))} MB/s")
+ print(f"duration: {end - start}")
+ print(f"speed: {bytes_written / (1000000 * (end - start))} MB/s")
diff --git a/sgkit/tests/test_stats_utils.py b/sgkit/tests/test_stats_utils.py
@@ -107,7 +107,7 @@ def sample_dataset(draw):
  # Split first dimension assignment into two groups and assign second
  # dimension with unique names since n cols will differ
  dims = [
- (f"dim-0-{i%2}",) if i < n_1d else (f"dim-0-{i%2}", f"dim-1-{i}")
+ (f"dim-0-{i % 2}",) if i < n_1d else (f"dim-0-{i % 2}", f"dim-1-{i}")
  for i in range(n_arrs)
  ]
 

diff --git a/validation/gwas/method/regenie/hail_sim.py b/validation/gwas/method/regenie/hail_sim.py
@@ -49,8 +49,8 @@ def get_plink_sim_dataset(n_variants=16, n_samples=4, n_contigs=2, seed=0):
  for s in range(n_samples):
  data.append(
  {
- "v": f"{c+1}:{v+1}:A:C",
- "s": f"S{s+1:07d}",
+ "v": f"{c + 1}:{v + 1}:A:C",
+ "s": f"S{s + 1:07d}",
  "cm": 0.1,
  "GT": hl.Call([rs.randint(0, 2), rs.randint(0, 2)]),
  }