Use sgkit.distarray for gwas_linear_regression #265
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| name: Benchmarks | |
| on: | |
| push: | |
| branches: | |
| - main | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GH_TOKEN }} | |
| BENCHMARKS_REPO: sgkit-dev/sgkit-benchmarks-asv | |
| ASV_CONFIG: benchmarks/asv.conf.json | |
| MACHINE_NAME: github-actions # to identify github actions machine as hostname changes everytime | |
| jobs: | |
| build: | |
| # This workflow only runs on the origin org | |
| if: github.repository_owner == 'sgkit-dev' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 # To fetch all commits to be able to generate benchmarks html | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update -y | |
| python -m pip install --upgrade pip | |
| pip install asv | |
| - name: Set and log asv machine configuration | |
| run: | | |
| asv machine --yes --config benchmarks/asv.conf.json | |
| echo "Machine Configuration:" | |
| cat ~/.asv-machine.json | |
| rm ~/.asv-machine.json | |
| echo "Setting machine name to $MACHINE_NAME" | |
| asv machine --machine $MACHINE_NAME --yes --config $ASV_CONFIG -v | |
| - name: Run benchmarks | |
| run: | | |
| asv run --config $ASV_CONFIG -v | |
| - name: Copy benchmarks to benchmarks repo directory | |
| run: | | |
| git clone https://[email protected]/$BENCHMARKS_REPO.git ~/$BENCHMARKS_REPO | |
| RESULTS_DIR=~/$BENCHMARKS_REPO/results | |
| if [ -d "$RESULTS_DIR" ] | |
| then | |
| cp -r $RESULTS_DIR/$MACHINE_NAME/* benchmarks/results/$MACHINE_NAME/ | |
| else | |
| echo "results/ directory does not exist in the benchmarks repository" | |
| fi | |
| asv publish --config $ASV_CONFIG -v | |
| cp -r benchmarks/html/* ~/$BENCHMARKS_REPO/ | |
| cp -r benchmarks/results ~/$BENCHMARKS_REPO/ | |
| - name: Push benchmarks | |
| run: | | |
| cd ~/$BENCHMARKS_REPO | |
| git add . | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "sgkit benchmark bot" | |
| git commit -m "Update benchmarks" | |
| git push origin main |