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sghosh89 committed Jan 22, 2024
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Expand Up @@ -2,48 +2,15 @@ Repository for analysis:
Synchrony and tail-dependent synchrony have different effects on the stability of terrestrial and freshwater communities


Authors: Shyamolina Ghosh (1,2,3*), Blake Matthews (2), Sarah R. Supp (4), Roel van Klink (5,6), Francesco Pomati (7), James A. Rusak (8),
Imran Khaliq (7,9,10), Niklaus E. Zimmermann (1,11), Thomas Wohlgemuth (1), Ole Seehausen (2,12), Christian Rixen (9,13), Martin M. Gossner (1,11),
Anita Narwani (7), Jonathan M. Chase (5,6), Catherine H. Graham (1)



Affiliations:
1. Swiss Federal Institute for Forest, Snow and Landscape Research WSL; Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
2. Department of Fish Ecology and Evolution, Eawag, Swiss Federal Institute of Aquatic Science and Technology; Seestrasse 79, Kastanienbaum, 6047 Switzerland
3. Department of Evolutionary Biology and Environmental studies, University of Zurich; Winterthurerstrasse 190, 8057 Zurich, Switzerland
4. Data Analytics Program, Denison University; Granville, Ohio, 43023 USA
5. German Centre for Integrative Biodiversity Research (iDiv); Halle-Jena-Leipzig, 04103 Leipzig, Germany
6. Department of Computer Science, Martin Luther University-Halle Wittenberg; 06099 Halle (Saale), Germany
7. Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology; Überlandstrasse 133, Dübendorf, 8600 Switzerland
8. Department of Biology, Queen’s University, Kingston, ON, Canada K7L 3N6
9. WSL Institute for Snow and Avalanche Research SLF; 7260 Davos Dorf, Switzerland
10. Department of Zoology, Government (defunct) post-graduate college, Dera Ghazi Khan, 32200 Pakistan
11. Department of Environmental Systems Science, ETH Zurich; Zurich, Switzerland
12. Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, CH-3012 Bern, Switzerland
13. Climate Change, Extremes and Natural Hazards in Alpine Regions Research Center CERC; 7260 Davos Dorf, Switzerland

*Corresponding author: Shyamolina Ghosh ([email protected])


About:
This repository records the complete workflow that produced the analysis from the data.
Each folder contains a "README.txt" to guide through the repository. Data are deposited in the ZENODO
(doi: 10.5281/zenodo.8233591; url: https://doi.org/10.5281/zenodo.8233591).
Each folder contains a "README.txt" to guide through the repository.
The core software dependency is R (R Core Team, 2022. R: A language and environment for statistical computing.
R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.).
Codes are written and performed by Ghosh with R version 4.2.1 on a windows 10 laptop. This repository is intended
to record a workflow, and is not designed or tested for distribution and wide use on multiple platforms.
For any reproducibility issue, you may contact S. Ghosh at [email protected]

Funding and acknowledgement:
The authors thank David Vasseur for getting the requested data from a published article with no open data.
We also thank Dr. Shahid Naeem for his constructive feedback on the initial draft of the manuscript.
We thank the ETH Board for funding through the Blue-Green Biodiversity (BGB) Initiative 2020,
the Seehausen/Eawag lab and European Research Council under the European Union’s Horizon 2020 research and
innovation program (grant agreement No 787638) granted to CHG. We would like to thank the large number of
scientists and volunteers that contributed to long-term data collection, and the data providers who chose
to openly publish and share their datasets for continued analysis.





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