Changed ir_junction_aa_length to junction_aa_length

sfu-ireceptor · Nov 17, 2017 · eca2606 · eca2606
1 parent 3db24ea
commit eca2606
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Showing 2 changed files with 62 additions and 61 deletions.
diff --git a/iReceptor_Data_Service_API_V2.json b/iReceptor_Data_Service_API_V2.json
@@ -152,6 +152,10 @@
           "type": "integer",
           "description": "Number of junction nucleotides in sequence_vdj (CDR3 + conserved residues)\n"
         },
+        "junction_aa_length": {
+          "type": "integer",
+          "description": "Length of JUNCTION in amino acids"
+        },
         "functional": {
           "type": "string",
           "description": "Filter for sequences that are either functional, non-functional, or both\n"
@@ -185,10 +189,6 @@
         "ir_show_unproductive": {
           "type": "string",
           "description": "By default, only productive sequences are returned. In order to return unproductive sequences, set this parameter to \"T\""
-        },
-        "ir_junction_aa_length": {
-          "type": "integer",
-          "description": "Length of JUNCTION in amino acids (iReceptor)"
         }
       }
     }
@@ -566,6 +566,20 @@
       "type": "integer",
       "description": "Number of junction nucleotides in sequence_vdj (CDR3 + conserved residues)\n"
     },
+    "junction_aa_length": {
+      "name": "junction_aa_length",
+      "in": "query",
+      "description": "Length of JUNCTION (CDR3 + conserved residues) in amino acids",
+      "required": false,
+      "type": "integer"
+    },
+    "junction_aa_length_form": {
+      "name": "junction_aa_length",
+      "in": "formData",
+      "description": "Length of JUNCTION (CDR3 + conserved residues) in amino acids",
+      "required": false,
+      "type": "integer"
+    },
     "functional": {
       "name": "functional",
       "in": "query",
@@ -647,20 +661,6 @@
       "description": "Length of JUNCTION (CDR3 + conserved residues) in nucleotide base pairs (iReceptor)",
       "required": false,
       "type": "integer"
-    },
-    "ir_junction_aa_length": {
-      "name": "ir_junction_aa_length",
-      "in": "query",
-      "description": "Length of JUNCTION (CDR3 + conserved residues) in amino acids (iReceptor)",
-      "required": false,
-      "type": "integer"
-    },
-    "ir_junction_aa_length_form": {
-      "name": "ir_junction_aa_length",
-      "in": "formData",
-      "description": "Length of JUNCTION (CDR3 + conserved residues) in amino acids (iReceptor)",
-      "required": false,
-      "type": "integer"
     }
   },
   "schemes": [
@@ -957,13 +957,13 @@
             "$ref": "#/parameters/junction_length"
           },
           {
-            "$ref": "#/parameters/functional"
+            "$ref": "#/parameters/junction_aa_length"
           },
           {
-            "$ref": "#/parameters/ir_show_unproductive"
+            "$ref": "#/parameters/functional"
           },
           {
-            "$ref": "#/parameters/ir_junction_aa_length"
+            "$ref": "#/parameters/ir_show_unproductive"
           }
         ],
         "operationId": "getSequenceSummary",
@@ -1027,13 +1027,13 @@
             "$ref": "#/parameters/junction_length_form"
           },
           {
-            "$ref": "#/parameters/functional_form"
+            "$ref": "#/parameters/junction_aa_length_form"
           },
           {
-            "$ref": "#/parameters/ir_show_unproductive_form"
+            "$ref": "#/parameters/functional_form"
           },
           {
-            "$ref": "#/parameters/ir_junction_aa_length_form"
+            "$ref": "#/parameters/ir_show_unproductive_form"
           }
         ],
         "operationId": "postSequenceSummary",
@@ -1103,13 +1103,13 @@
             "$ref": "#/parameters/junction_length"
           },
           {
-            "$ref": "#/parameters/functional"
+            "$ref": "#/parameters/junction_aa_length"
           },
           {
-            "$ref": "#/parameters/ir_show_unproductive"
+            "$ref": "#/parameters/functional"
           },
           {
-            "$ref": "#/parameters/ir_junction_aa_length"
+            "$ref": "#/parameters/ir_show_unproductive"
           }
         ],
         "operationId": "getSequenceData",
@@ -1168,13 +1168,13 @@
             "$ref": "#/parameters/junction_length_form"
           },
           {
-            "$ref": "#/parameters/functional_form"
+            "$ref": "#/parameters/junction_aa_length_form"
           },
           {
-            "$ref": "#/parameters/ir_show_unproductive_form"
+            "$ref": "#/parameters/functional_form"
           },
           {
-            "$ref": "#/parameters/ir_junction_aa_length_form"
+            "$ref": "#/parameters/ir_show_unproductive_form"
           }
         ],
         "operationId": "postSequenceData",
@@ -1233,13 +1233,13 @@
             "$ref": "#/parameters/junction_length_form"
           },
           {
-            "$ref": "#/parameters/functional_form"
+            "$ref": "#/parameters/junction_aa_length_form"
           },
           {
-            "$ref": "#/parameters/ir_show_unproductive_form"
+            "$ref": "#/parameters/functional_form"
           },
           {
-            "$ref": "#/parameters/ir_junction_aa_length_form"
+            "$ref": "#/parameters/ir_show_unproductive_form"
           }
         ],
         "operationId": "postCloneSummary",
@@ -1309,13 +1309,13 @@
             "$ref": "#/parameters/junction_length_form"
           },
           {
-            "$ref": "#/parameters/functional_form"
+            "$ref": "#/parameters/junction_aa_length_form"
           },
           {
-            "$ref": "#/parameters/ir_show_unproductive_form"
+            "$ref": "#/parameters/functional_form"
           },
           {
-            "$ref": "#/parameters/ir_junction_aa_length_form"
+            "$ref": "#/parameters/ir_show_unproductive_form"
           }
         ],
         "operationId": "postCloneData",
@@ -1345,4 +1345,4 @@
       }
     }
   }
-}
+}
diff --git a/iReceptor_Data_Service_API_V2.yaml b/iReceptor_Data_Service_API_V2.yaml
@@ -114,6 +114,10 @@ definitions:
         type: integer
         description: |
           Number of junction nucleotides in sequence_vdj (CDR3 + conserved residues)
+      junction_aa_length:
+        type: integer
+        description: >-
+          Length of JUNCTION in amino acids
       functional:
         type: string
         description: |
@@ -149,10 +153,7 @@ definitions:
           description: >-
             By default, only productive sequences are returned. In order to return
             unproductive sequences, set this parameter to "T"
-        ir_junction_aa_length:
-          type: integer
-          description: >-
-            Length of JUNCTION in amino acids (iReceptor)
+
 parameters:
   #
   # Generally useful parameters for all API entry points.
@@ -513,6 +514,20 @@ parameters:
     type: integer
     description: |
       Number of junction nucleotides in sequence_vdj (CDR3 + conserved residues)
+  junction_aa_length:
+    name: junction_aa_length
+    in: query
+    description: >-
+      Length of JUNCTION (CDR3 + conserved residues) in amino acids
+    required: false
+    type: integer
+  junction_aa_length_form:
+    name: junction_aa_length
+    in: formData
+    description: >-
+      Length of JUNCTION (CDR3 + conserved residues) in amino acids
+    required: false
+    type: integer
   functional:
     name: functional
     in: query
@@ -604,20 +619,6 @@ parameters:
       Length of JUNCTION (CDR3 + conserved residues) in nucleotide base pairs (iReceptor)
     required: false
     type: integer
-  ir_junction_aa_length:
-    name: ir_junction_aa_length
-    in: query
-    description: >-
-      Length of JUNCTION (CDR3 + conserved residues) in amino acids (iReceptor)
-    required: false
-    type: integer
-  ir_junction_aa_length_form:
-    name: ir_junction_aa_length
-    in: formData
-    description: >-
-      Length of JUNCTION (CDR3 + conserved residues) in amino acids (iReceptor)
-    required: false
-    type: integer
 schemes:
   - https
 produces:
@@ -801,9 +802,9 @@ paths:
         - $ref: '#/parameters/j_call'
         - $ref: '#/parameters/junction_aa'
         - $ref: '#/parameters/junction_length'
+        - $ref: '#/parameters/junction_aa_length'
         - $ref: '#/parameters/functional'
         - $ref: '#/parameters/ir_show_unproductive'
-        - $ref: '#/parameters/ir_junction_aa_length'
       operationId: getSequenceSummary
       responses:
         '200':
@@ -849,9 +850,9 @@ paths:
         - $ref: '#/parameters/j_call_form'
         - $ref: '#/parameters/junction_aa_form'
         - $ref: '#/parameters/junction_length_form'
+        - $ref: '#/parameters/junction_aa_length_form'
         - $ref: '#/parameters/functional_form'
         - $ref: '#/parameters/ir_show_unproductive_form'
-        - $ref: '#/parameters/ir_junction_aa_length_form'
       operationId: postSequenceSummary
       responses:
         '200':
@@ -902,9 +903,9 @@ paths:
         - $ref: '#/parameters/j_call'
         - $ref: '#/parameters/junction_aa'
         - $ref: '#/parameters/junction_length'
+        - $ref: '#/parameters/junction_aa_length'
         - $ref: '#/parameters/functional'
         - $ref: '#/parameters/ir_show_unproductive'
-        - $ref: '#/parameters/ir_junction_aa_length'
       operationId: getSequenceData
       responses:
         '200':
@@ -947,9 +948,9 @@ paths:
         - $ref: '#/parameters/j_call_form'
         - $ref: '#/parameters/junction_aa_form'
         - $ref: '#/parameters/junction_length_form'
+        - $ref: '#/parameters/junction_aa_length_form'
         - $ref: '#/parameters/functional_form'
         - $ref: '#/parameters/ir_show_unproductive_form'
-        - $ref: '#/parameters/ir_junction_aa_length_form'
       operationId: postSequenceData
       responses:
         '200':
@@ -989,9 +990,9 @@ paths:
         - $ref: '#/parameters/j_call_form'
         - $ref: '#/parameters/junction_aa_form'
         - $ref: '#/parameters/junction_length_form'
+        - $ref: '#/parameters/junction_aa_length_form'
         - $ref: '#/parameters/functional_form'
         - $ref: '#/parameters/ir_show_unproductive_form'
-        - $ref: '#/parameters/ir_junction_aa_length_form'
       operationId: postCloneSummary
       responses:
         '200':
@@ -1033,9 +1034,9 @@ paths:
         - $ref: '#/parameters/j_call_form'
         - $ref: '#/parameters/junction_aa_form'
         - $ref: '#/parameters/junction_length_form'
+        - $ref: '#/parameters/junction_aa_length_form'
         - $ref: '#/parameters/functional_form'
         - $ref: '#/parameters/ir_show_unproductive_form'
-        - $ref: '#/parameters/ir_junction_aa_length_form'
       operationId: postCloneData
       responses:
         '200':