splitpairs

Sometimes it is necessay to split your interleaved file of forward and reverse reads into separate files.

$ pairfq splitpairs -i s_1_interl.fq -f s_1_1_p.fq -r s_1_2_p.fq

The conventions used here are the same as with all the commands, -f specifies the file of forward reads to create and -r the reverse reads.