Pairfq version 0.17.0

Summary of changes in this version:

• Bug fix for handling opened processes. When the input is a named pipes or piped processes
  through process substitution, these processes are now opened correctly.
• Bug fix for handling options to main program. The help/man/version options were not being
  processed in the right order and were being treated as subcommands. Added an explicit
  test for this behaviour and version information is now logged to the console during testing.

See the "Changes" file for more information.

Pairfq version 0.16.1

Summary of changes in this version:

• Modify how options are processed in main application. Remove manual setting of
  keys in option hash.

See the "Changes" file for more information.

Pairfq version 0.16.0

Summary of changes in this version:

• Clean up Unix paths correctly (e.g. '/some/relative/../path' becomes '/some/path').
  Fixes #10 on github.

See the "Changes" file for more information.

Pairfq version 0.14.7

Summary of changes in this version:

• Fix bug with compressing output (syntax error with imported methods).

See the "Changes" file for more information.

Pairfq version 0.14.4

Summary of changes in this version:

• Add option to write to STDOUT for 'addinfo' and 'joinpairs'
  commands.
• Allow to read from stdin with a '-' or case-insensitive 'stdin'
  term (this unintentionally only worked with uppercase STDIN before).

See the "Changes" file for more information.

Pairfq version 0.14.3

Summary of changes in this version:

• Add conditional to check if comment is missing after pair
  id with Illumina 1.8+ identifiers.

See the "Changes" file for more information.

Pairfq version 0.14.1

Summary of changes in this version:

• Remove dependencies used only for testing (List::MoreUtils
  and IPC::System::Simple) in favor of core modules/methods.

See the "Changes" file for more information.

Pairfq version 0.14

v0.14

remove instructions for installing berkeleydb, which we do not use now

Pairfq version 0.13.1

v0.13.1

add doi for citation