Update nextflow.config to use projectDir for test paths #26
Workflow file for this run
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| name: test-pipeline | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| env: | |
| NXF_ANSI_LOG: false | |
| # Cancel if a newer run is started | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| nextflow: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: setup-nextflow | |
| uses: nf-core/setup-nextflow@v1 | |
| - name: run-nextflow | |
| run: nextflow run . -profile my_laptop,demo -c .github/workflows/nextflow.config |