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Add more epitope databases to datasets #308

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grst opened this issue Nov 15, 2021 · 4 comments
Open
2 of 8 tasks

Add more epitope databases to datasets #308

grst opened this issue Nov 15, 2021 · 4 comments
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good first issue Good for newcomers

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@grst
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grst commented Nov 15, 2021

List adapted from #54.

@grst grst added the good first issue Good for newcomers label Nov 15, 2021
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grst commented Jun 23, 2022

@ausserh, how about adding your code for IEDB to scirpy directly?

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grst commented May 23, 2023

More databases can potentially be accessed via biocypher. See also #404.
CC @slobentanzer

@slobentanzer
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am on holiday, but will address this once i am back. mcpas is included in the adapters we did at the hackathon. cc @dbdimitrov

@grst grst added this to scirpy-dev May 28, 2024
@grst grst moved this to prio2 in scirpy-dev May 28, 2024
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grst commented Oct 31, 2024

Here's a preprint where they compiled a unified database: https://www.biorxiv.org/content/10.1101/2024.10.26.620398v1
Maybe also a good starting point for the knowledge graph.

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