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This repository has been archived by the owner on Mar 9, 2023. It is now read-only.
I'm using this tutorial for exporting adata object to SPRING input.
First suggestion to update this tutorial, I had to modify this slightly per the updates in the command: sc.external.exporting.spring_project(adata, './spring_adata',embedding_method='umap',overwrite=True)
However, my main issue is even this command does not completely output the files required for SPRING plot.
Specifically, the directory with files as follows are not created- gene_colors/color_data_all_genes-*.csv
This is a required input for SPRING.
Can you please update the code to reflect this output.
The text was updated successfully, but these errors were encountered:
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I'm using this tutorial for exporting adata object to SPRING input.
First suggestion to update this tutorial, I had to modify this slightly per the updates in the command:
sc.external.exporting.spring_project(adata, './spring_adata',embedding_method='umap',overwrite=True)
However, my main issue is even this command does not completely output the files required for SPRING plot.
Specifically, the directory with files as follows are not created- gene_colors/color_data_all_genes-*.csv
This is a required input for SPRING.
Can you please update the code to reflect this output.
The text was updated successfully, but these errors were encountered: