Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[0.5.5] - 2024-10-07

Added

New function to grab layer by name #315 @minhtien-trinh
New annotation function to add text to polygons #315 @minhtien-trinh

[0.5.4] - 2024-xx-xx

Fixed

Bug wrong radii transformed circles (e.g. with Visium lowres)

[0.5.3] - 2024-09-25

Fixed

Bug table was not reset after an element without table was added #317
Bug when changing channel for a multichannel image #301 #302
Bug when plotting catgorical annotations on points #304

[0.5.2] - 2024-08-16

Minor

Modernized release workflow

[0.5.1] - 2024-08-07

Changed

RGB is now detected based on axis names in .c (pass ("r","g","b") or ("r","g","b", "a")to c_coords argument when parsing the Image(2D / 3D)Model) @aeisenbarth #153

[0.5.0] - 2024-07-03

Added

New annotation widget for managing shapes annotations @melonora #233 #261
Showing image channel names in var widget for easy channel selection #254

Fixed

Fixed scatterplot widget #247
Fixed contrast limits for images #265

[0.4.1] - 2024-03-30

Fixed

Saving shapes and points with Shift + E now saves 2D data (a z dim was wrongly added)

[0.4.0] - 2024-03-24

Added

Multi table support #199 @melonora
Color shapes and points by values in dataframe in addition to tables #216

Fixed

Avoid exception when registering shortcuts #201 @aeisenbarth
Fix wrong point size when affine specified #193
Wrong element visiblity when changing coordinate system #207
Cleaned up data model #180
Fixes correct matching of geometies and annoations via join #208
Better docstrings #219

[0.3.1] - 2023-11-11

Fix

removed npe (napari plugin engine) dependency

[0.3.0] - 2023-11-09

Added

New APIs for changing coordinate systems #169
New APIs for adding single elements #170
Improved code to link new layers to layers with a SpatialData object #173

Fixed

Enabled saving annotations #168
Added safeguard when table is None #177 @aeisenbarth
Fix plotting annotations when changing element #175
Fixed installation requirements #185 @goanpeca

[0.2.8] - 2023-10-30

Added

Global parameters POINT_THRESHOLD and POLYGON_THRESHOLD added to allow users to adjust these parameters.

Fixed

Updated dependencies
Updated installation instructions since napari conda-forge no longer installs Qt backend. @psobolewskiPhD
Allow for viewing SpatialData object with no annotations. @aeisenbarth

[0.2.7] - 2023-10-02

Added

Multiple SpatialData objects support (ported from the "spatialdata" branch)
Interactive is more ergonomic, has a headless parameter, can be used to display pre-configured elements
Remembering user layer visibility settings when changing coordinate system

Fixed

Fixes in CLI
Several internal bugfixes and code refactorings
Fixes in updating affine transformation when changing coordinate system

[0.2.6] - 2023-07-13

Fixed

Wrong tag preventing the release to pip (the previous tag was not of a commit merged to main).

[0.2.5] - 2023-07-13

Fixed

CLI @berombau @LucaMarconato
Display of points and circles @LucaMarconato
Issue with name reinitialization @tothmarcella
Reverted to use PyQt5 @melonora
RGB/RGBA correctly displayed for 3/4 channel images @rahulbshrestha
Layer visibility changes when changing coordinate system @melonora
Performance with multiscale images @LucaMarconato
Refactored internal code to prepare for future refactoring @melonora

Thanks

Reviewers @giovp @timtreis @kevinyamauchi and the users that reported bugs.

[0.2.4] - 2023-05-23

Added

Color circles and polygons with annotations (#73)

[0.2.3] - 2023-05-11

Fixed

Shapes support

[0.2.1] - 2023-05-04

Fixed

Package versioning (#63)

[0.2.0] - 2023-05-04

Merged

Merge pull request #62 from scverse/kevinyamauchi-patch-1 - Install spatialdata from pypi