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Use central job enqueue logic for jobs spawned by rules #962

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merged 6 commits into from
Oct 25, 2017
Merged

Use central job enqueue logic for jobs spawned by rules #962

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8172811
Use enqueue logic for rule jobs
nagem Oct 23, 2017
12d700e
Remove broad exception handling
nagem Oct 23, 2017
ceb735f
Check to see if config key exists
nagem Oct 23, 2017
17f9f82
Add fill defaults
nagem Oct 24, 2017
732d8bc
Add tests
nagem Oct 24, 2017
c6aef26
Remove unneeded comment
nagem Oct 25, 2017
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10 changes: 10 additions & 0 deletions api/jobs/gears.py
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Original file line number Diff line number Diff line change
Expand Up @@ -124,6 +124,16 @@ def validate_gear_config(gear, config_):
})
return True

def fill_gear_default_values(gear, config_):
"""
Given a gear and a config map, fill any missing keys using defaults from the gear's config
"""

for k,v in gear['gear'].get('config', {}).itervalues:
if 'default' in v:
config_.setdefault(k, v['default'])


def insert_gear(doc):
gear_tools.validate_manifest(doc['gear'])

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3 changes: 2 additions & 1 deletion api/jobs/queue.py
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Expand Up @@ -9,7 +9,7 @@

from .. import config
from .jobs import Job
from .gears import get_gear, validate_gear_config
from .gears import get_gear, validate_gear_config, fill_gear_default_values
from ..validators import InputValidationException
from ..dao.containerutil import create_filereference_from_dictionary, create_containerreference_from_dictionary, create_containerreference_from_filereference

Expand Down Expand Up @@ -157,6 +157,7 @@ def enqueue_job(job_map, origin, perm_check_uid=None):
raise InputValidationException('Gear marked as invalid, will not run!')

config_ = job_map.get('config', {})
fill_gear_default_values(gear, config_)
validate_gear_config(gear, config_)

# Translate maps to FileReferences
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7 changes: 6 additions & 1 deletion api/jobs/rules.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
import fnmatch

from .. import config
from ..types import Origin
from ..dao.containerutil import FileReference

from . import gears
Expand Down Expand Up @@ -236,10 +237,14 @@ def create_jobs(db, container_before, container_after, container_type):


spawned_jobs = []
origin ={
'type': str(Origin.system),
'id': None
}

for pj in potential_jobs:
job_map = pj['job'].map()
Queue.enqueue_job(job_map, None) # passing no origin results in system origin
Queue.enqueue_job(job_map, origin) # passing no origin results in system origin
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Should remove that comment now


spawned_jobs.append(pj['rule']['alg'])

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