Osprey v2.6.0

What's Changed

• LCModel integration Ubuntu by @HJZollner in #615
• Merge pull request #613 from schorschinho/develop by @HJZollner in #614
• Add dummy software by @HJZollner in #616
• [BUG FIX] - Update Matlab version requirement for GUI in Osprey docs - Osprey Docs - Carl #617 by @CWDAVIESJENKINS in #618
• Bugfix, io_readlcmraw_basis METABO_* tags by @alexcraven in #619
• Fix #621 by @CWDAVIESJENKINS in #623
• [BUG FIX] - Can't compile Osprey CLI for Ubuntu - CompileOspreyStanda… by @HJZollner in #624
• [FEATURE REQUEST] - Account for ADC phase shift in Philips nii data -… by @HJZollner in #627
• HBCD reports update by @HJZollner in #628
• Add voxel dims by @HJZollner in #629
• [BUG FIX] - leading or trailing whitespaces by @HJZollner in #633
• [BUG FIX] - empty position entry in DICOM header by @HJZollner in #634
• Avoid trailing whitespace in generated file lists by @alexcraven in #635
• [BUG FIX] - frequency-restricted specreg crashing - op_SpecRegFreqRes… by @HJZollner in #637
• Update Tarquin_importer by @HJZollner in #638
• Solving some issues with new GE HBCD sequence by @HJZollner in #640
• [FEATURE] - Loader for .7.anon files by @HJZollner in #642
• Fix #653 by @CWDAVIESJENKINS in #654
• [BUG FIX] - relaxation correction for waterScaled/CSFcorrected estima… by @HJZollner in #658
• Changes to LCModel wrapper by @HJZollner in #659
• Remove bug caught by CI by @HJZollner in #660
• Add flag to make undoPhaseCycling optional by @HJZollner in #663
• Support for GE Pfile rev30 by @HJZollner in #664
• [BUG FIX] - Error in osp_fit_Quality when using LCModel by @HJZollner in #665
• [BUG FIX] - Exporting figures from the Overview tab by @HJZollner in #666
• [BUG FIX] - Unknown field img in HTMLReport - OspreyHTMLReport by @HJZollner in #668
• [BUG FIX] - Osprey crashes for json jobfiles without images - OspreyJ… by @HJZollner in #670
• [BUG FIX] - TR parsed wrongly for niimrs by @HJZollner in #673
• Edits to allow Osprey to run in the Apple silicon version of MATLAB R2023b by @markmikkelsen in #671
• fix missing DicomHeader.seqorig field in from Siemens Minnesota seqs by @cjohnevans in #674
• Automatically recalculate basis spectra in fit_plotBasis by @HJZollner in #680
• [BUG FIX] - XA30 DICOM loader - read_dcm_header - CWDJ in #682 by @CWDAVIESJENKINS in #683
• [FEATURE] - Support CMRR sequence with integrated water refernece by @HJZollner in #685
• Add sLASER basis by @HJZollner in #686
• [Bug fix] - dicom loading from file path by @CWDAVIESJENKINS in #687
• Update io_loadspec_twix by @HJZollner in #688
• BUG FIX - ISHTMUS partial Siemens and GE data by @HJZollner in #690
• [BUG FIX] - Incorrect name for VoxelOverlap in spm152-space by @HJZollner in #692
• GE sLASER CMRR by @HJZollner in #693
• Update 03-jobfiles.Rmd by @WorldlyPirate in #694
• Add flag to preserve polarity by @HJZollner in #698
• Add LCModel support for GABA-edited MEGA-PRESS by @HJZollner in #699
• Multiple external .BASIS files by @HJZollner in #700
• [BUG FIX] - isMinn flag missing - io_loadsoec_tiwx by @HJZollner in #703
• Bug fix exclude by @HJZollner in #706
• Update io_loadspec_twix messages by @HJZollner in #707
• Update 03-jobfiles.Rmd by @WorldlyPirate in #696
• io_loadspec_niimrs.m : bugfix for optional dim_{n}_header by @alexcraven in #701
• Adaptions of geometry header from XA to VE in io_loadspec_rda.m by @raumhein in #697
• [BUG FIX] - LCModelWrapper - Helge by @HJZollner in #713
• [BUG FIX] - segmentation not working - OspreySeg by @HJZollner in #714
• [BUG FIX] - Failed to add analysis provenance by @HJZollner in #715
• [BUG FIX] - relative residual for water scans wrong by @HJZollner in #716
• [BUG FIX] - Crash osp_fitInitialise by @HJZollner in #717
• [FEATURE] - Manual manipulation of spectra inside GUI by @HJZollner in #719
• [BUG FIX] - Siemens edit WIP not loading correctly - io_loadspec_twix… by @HJZollner in #722
• [BUG FIX] - GUI job generator GSH-editing - CreateOspreyJob_app - Ale… by @HJZollner in #724
• [FEATURE] - More flexibility for MEGA-PRESS LCModel wrapper - Alex Cr… by @HJZollner in #725
• [BUG] - osp_plotModule crashes for w data only - osp_plotModule by @HJZollner in #727
• Fix lcmodel permissions in LCModelWrapper.m by @alexcraven in #729
• Partial fix #730: mixed types for basisSetFile by @alexcraven in #731
• Adaptable frequency referencing for phantoms by @alexcraven in #732
• [BUG FIX] - Load/Process crash for phantom data - osp_combineCoils/osp_Ph… by @HJZollner in #736
• [BUG FIX] - MEGA-PRESS XA31 files extra dim issues - OspreyLoad - Ale… by @HJZollner in #738
• [BUG FIX] - osp_saveNII fails if water signal does not originate from… by @HJZollner in #739
• [BUG FIX] - twix_object read only - io_loadspec_twix - Alex Gussew by @HJZollner in #741
• [BUG FIX] - Post-alignment plot incorrect - osp_plotProcess - Shahrok… by @HJZollner in #745
• Fixes #746 by @CWDAVIESJENKINS in #747
• Cleanup osp_Toolbox_Check by @alexcraven in #749
• [BUG FIX] - 180 flip not corrected before alignment - OspreyProcess -… by @HJZollner in #751
• Prepare release v.2.6.0 by @HJZollner in #752
• Release Osprey v2.6.0 by @HJZollner in #753

New Contributors

• @alexcraven made their first contribution in #619
• @cjohnevans made their first contribution in #674
• @WorldlyPirate made their first contribution in #694
• @raumhein made their first contribution in #697

Full Changelog: v.2.5.0...v.2.6.0