add conda dep install to integrated test

schneebergerlab · Dec 10, 2024 · 94f9e7f · 94f9e7f
1 parent 3b692f4
commit 94f9e7f
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/.github/workflows/test_example.yml b/.github/workflows/test_example.yml
@@ -21,6 +21,9 @@ jobs:
       uses: schneebergerlab/msyd@main
       with:
         python-version: "3.12"
+    - name: Install other tools using conda
+      run: |
+        $CONDA/bin/conda install -c conda-forge -c bioconda "minimap2"
     - name: Test example_run.sh
       run: |
         # alias to a call launching the syri entrypoint from python