spoof python version requirement #7

	# This workflow will build msyd as a python package, and call the CLI interface to check the install worked
	# adapted from
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Build python package

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.8", "3.9", "3.10", "3.11", "3.12", "3.13"]

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip setuptools
	# manually install syris dependencies
	# seems to be no longer necessary with github install
	#pip install Cython numpy pandas scipy psutil igraph longestrunsubsequence pysam pulp
	# manually use pip to install syri from github, as it isn't on pypi
	# spoof python version to get around bounds check
	pip install git+https://github.com/schneebergerlab/syri.git#egg=syri --python-version '3.10' #--no-warn-conflicts
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	- name: Build package
	run: pip install .
	- name: Test package is installed successfully
	run: \|
	msyd -h
	msyd call -h
	msyd view -h

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