touch up example workflow #4
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# This workflow will build msyd as a python package, and call the CLI interface to check the install worked | |
# adapted from | |
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
name: Build python package | |
on: | |
push: | |
branches: [ "main" ] | |
pull_request: | |
branches: [ "main" ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: pip | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip setuptools | |
# apparently the runners all have conda installed | |
# use that to install syri, as it isn't on pypi | |
$CONDA/bin/conda install -c conda-forge -c bioconda "syri>=1.6.5" | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Build package | |
run: pip install . | |
- name: Test package is installed successfully | |
run: | | |
msyd -h | |
msyd call -h | |
msyd view -h |