This repository has been merged with the Baliga-lab branch
Utilities and scripts for generating, assembling, and querying EGRIN2.0 ensembles generated by cMonkey2 biclustering algorithm
Documentation is available on the wiki. Developers and users may also refer to the cMonkey2 discussion groups for additional information.
- Developed and tested with Python 2.7.6
- biopython >= 1.65
- colorbrewer >= 9172
- joblib >= 0.7.1
- matplotlib >= 1.3.1
- numpy >= 1.8.2
- pandas >= 0.15.2
- plotly >= 1.6.6
- pymongo >= 2.7.2
- scipy >= 0.13.3
- statsmodels >= 0.6.1
These can be installed easily using pip.
In addition, you must compile the C++ code provided in the src directory. Instructions for compiling this code are available on the wiki.