Code

Tensorflow segmentation#3461

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Merged

daniel-wer merged 65 commits intomasterscalableminds/webknossos:masterfrom tensorflow-segmentationscalableminds/webknossos:tensorflow-segmentationCopy head branch name to clipboardApr 10, 2019

+4,987-1,871

Commits

Commits on Nov 16, 2018

• integrate first version of tensorflow-js segmentation model

  philippotto

  committed
  8dcc126

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• add flood fill and whole viewport prediction

  daniel-wer

  committed
  a9c32f1

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• implement high-perf way of accessing arbitrary cuboid data in front-end

  philippotto

  committed
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Commits on Nov 17, 2018

• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  philippotto

  committed
  d6be4b9

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• fix some things, wand is working again

  daniel-wer

  committed
  9d60b9c

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• fix everything

  daniel-wer

  committed
  9555cef

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• copy tf models via webpack

  philippotto

  committed
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Commits on Dec 5, 2018

• upgrade webpack

  daniel-wer

  committed
  abe44ef

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• increase node memory

  daniel-wer

  committed
  17bcbe9

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• fix lint, tests

  daniel-wer

  committed
  a0c1905

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• Merge branch 'master' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
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Commits on Mar 20, 2019

• Merge branch 'master' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
  33086e5

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• fix model asset path

  daniel-wer

  committed
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Commits on Mar 25, 2019

• Merge branch 'master' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
  9bedea7

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Commits on Mar 26, 2019

• update tensorflowjs to 1.0

  daniel-wer

  committed
  26b1e4b

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• move viewport when pressing alt and moving mouse

  philippotto

  committed
  1d10247

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  philippotto

  committed
  608d84c

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• Tensorflow segmentation statistics (#3946)

  Show description for 96eb19a
  fm3

  authored
  96eb19a

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• adapt tensorflow segmentation to rectangular viewports

  daniel-wer

  committed
  b49010b

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
  159476b

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• fix lint

  daniel-wer

  committed
  c21268b

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• added mean and stdDev fetching route and using it for the magic wand tool

  MichaelBuessemeyer

  committed
  a111f4f

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• applied new formular again

  MichaelBuessemeyer

  committed
  b2eb004

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• fixed lint and flow

  MichaelBuessemeyer

  committed
  f9f3f9e

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• predict for next 5 slices as well

  daniel-wer

  committed
  fa87e5f

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• allow tf inference in webworker

  philippotto

  committed
  91a0795

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
  8eb0752

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• made magic wand tool optional

  MichaelBuessemeyer

  committed
  f86e981

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  MichaelBuessemeyer

  committed
  4ede20c

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation-webworker

  philippotto

  committed
  823dbd6

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  MichaelBuessemeyer

  committed
  7baa52d

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• fix shard in webpack-dev-server mode

  daniel-wer

  committed
  b3dce8f

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• enabled magic wand tool as default

  MichaelBuessemeyer

  committed
  92bfee9

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  MichaelBuessemeyer

  committed
  8f3c291

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• fix tests

  philippotto

  committed
  e52297c

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  philippotto

  committed
  2defef9

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  MichaelBuessemeyer

  committed
  c265c84

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• use new segem model, restrict viewport to 100x100 voxel for perf

  daniel-wer

  committed
  1a71d95

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• Merge branch 'tensorflow-segmentation' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
  5d322c9

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• small perf/cleanup fixes

  daniel-wer

  committed
  5f0dbf9

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Commits on Mar 27, 2019

• merge master into tensorflow-segmentation

  fm3

  committed
  9af6f18

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• load model from right path

  fm3

  committed
  2ec8d2b

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• only use webworker if offscreencanvas is supported

  philippotto

  committed
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Commits on Apr 1, 2019

• Merge branch 'master' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
  90d1ad2

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• use 3d-floodfill for magic wand

  daniel-wer

  committed
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Commits on Apr 3, 2019

• add and adapt floodfill lib, do 3d floodfill, do tile-based predict and floodfill

  daniel-wer

  committed
  eab3909

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• adapt floodfill to work slice for slice, optimize voxel labeling, remove unneccessary floodfill parts

  daniel-wer

  committed
  3a2da3a

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• add flow to floodfill, fix flow

  daniel-wer

  committed
  0276709

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• add magic wand unlimited mode, will predict next x slices until aborted via toast

  daniel-wer

  committed
  8d8b414

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• use global tiles instead of viewport local, makes everything easier

  daniel-wer

  committed
  3e6590e

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• update the whole position, so that segments that move out of the viewport later will be correctly predicted

  daniel-wer

  committed
  eb8cdf0

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• fix magic wand for xz and yz planes

  daniel-wer

  committed
  6da5961

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• fix mean,stddev memoization, refactor common code

  daniel-wer

  committed
  6a2cc69

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• small changes to toast and code

  daniel-wer

  committed
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Commits on Apr 8, 2019

• Merge branch 'master' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
  6d706d1

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• add new tensorflow model, apply PR feedback #1

  daniel-wer

  committed
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Commits on Apr 9, 2019

• apply PR feedback #2

  daniel-wer

  committed
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• update redux-saga and typedefs to 1.0, avoid spawning magic wand twice

  daniel-wer

  committed
  1bfcdcd

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• clean up prediction data for old z slices, rename magic wand to automatic brush

  daniel-wer

  committed
  e869fbe

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• refactor automatic brushing code into own module

  daniel-wer

  committed
  ec1415c

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• disable magic wand by default

  daniel-wer

  committed
  367eba4

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• Merge branch 'master' of github.com:scalableminds/webknossos into tensorflow-segmentation

  daniel-wer

  committed
  f1a9e47

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• react to zoom changes, amend automatic brush label

  daniel-wer

  committed
  d0cd45a

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Commits on Apr 10, 2019

• apply PR feedback #3, use newest model with slightly different normalization, make floodfill_threshold configurable

  daniel-wer

  committed
  7d1ed27

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• disable automatic brush by default

  daniel-wer

  committed
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