Releases: scalableminds/webknossos-libs
Releases · scalableminds/webknossos-libs
v0.2.49: High level dataset api chunking (#184)
* only log downsampling for each MB ob precessed data * log every gigabyte instead of every megabyte * implement PR feedback * WIP: implement high level dataset api * WIP: implement TiffMag * implement test for dataset api * refactor high level dataset api * add test data for WKDataset * improve high level dataset api and add more tests * use seed in tests to achieve deterministic behaviour * implement a test for writing out of bounds with a wk_slice * add possibility to define pattern for TiffDatasets * implement tiled tiff * improve quality of dataset tests * make naming schema of test files consistent * implement PR feedback * rename tiffs in testdata * Improve error message and reformat code * add type annotation * rename Slice to View * remove comments and reformat code * add scikit-image (which is needed for skimage) as dependency * update version of scikit-image * fix relative paths in tests * add possibility to get data of specific tile * reformat code * add test for png images * reformat code * make TiledTiffDataset a seperate class * add support for opening datasets which do not have num_channels in properties.json * add test for advanced pattern * use more efficient method to detect tile_ranges * rename file path of test case * support largestSegmentationId in properties * restructure properties * add dataType attribute to properties * WIP: implement chunking * implement PR feedback * remove comment * fix relative paths * fix writing data to an unopened dataset and support different orders of the dimensions with patterns * Adjust docstring of method Co-Authored-By: Philipp Otto <[email protected]> * use type to call subclass constructor * reformat code * Support tiled tiffs in high level dataset API (#178) * add possibility to define pattern for TiffDatasets * implement tiled tiff * add possibility to get data of specific tile * add test for png images * reformat code * make TiledTiffDataset a seperate class * add support for opening datasets which do not have num_channels in properties.json * add test for advanced pattern * use more efficient method to detect tile_ranges * rename file path of test case * support largestSegmentationId in properties * restructure properties * add dataType attribute to properties * implement PR feedback * fix writing data to an unopened dataset and support different orders of the dimensions with patterns * Adjust docstring of method Co-Authored-By: Philipp Otto <[email protected]> Co-authored-by: Philipp Otto <[email protected]> * implement get_view for a View; fix check_chunk_size for WKView * reformat code Co-authored-by: Philipp Otto <[email protected]>
v0.2.48: Support tiled tiffs in high level dataset API (#185)
* only log downsampling for each MB ob precessed data * log every gigabyte instead of every megabyte * implement PR feedback * WIP: implement high level dataset api * WIP: implement TiffMag * implement test for dataset api * refactor high level dataset api * add test data for WKDataset * improve high level dataset api and add more tests * use seed in tests to achieve deterministic behaviour * implement a test for writing out of bounds with a wk_slice * add possibility to define pattern for TiffDatasets * implement tiled tiff * improve quality of dataset tests * make naming schema of test files consistent * implement PR feedback * rename tiffs in testdata * Improve error message and reformat code * add type annotation * rename Slice to View * remove comments and reformat code * add scikit-image (which is needed for skimage) as dependency * update version of scikit-image * fix relative paths in tests * add possibility to get data of specific tile * reformat code * add test for png images * reformat code * make TiledTiffDataset a seperate class * add support for opening datasets which do not have num_channels in properties.json * add test for advanced pattern * use more efficient method to detect tile_ranges * rename file path of test case * support largestSegmentationId in properties * restructure properties * add dataType attribute to properties * implement PR feedback * fix writing data to an unopened dataset and support different orders of the dimensions with patterns * Adjust docstring of method Co-Authored-By: Philipp Otto <[email protected]> * Support tiled tiffs in high level dataset API (#178) * add possibility to define pattern for TiffDatasets * implement tiled tiff * add possibility to get data of specific tile * add test for png images * reformat code * make TiledTiffDataset a seperate class * add support for opening datasets which do not have num_channels in properties.json * add test for advanced pattern * use more efficient method to detect tile_ranges * rename file path of test case * support largestSegmentationId in properties * restructure properties * add dataType attribute to properties * implement PR feedback * fix writing data to an unopened dataset and support different orders of the dimensions with patterns * Adjust docstring of method Co-Authored-By: Philipp Otto <[email protected]> Co-authored-by: Philipp Otto <[email protected]> Co-authored-by: Philipp Otto <[email protected]>
v0.2.47: Enable Compression for NIFTI Conversion Script (#182)
Enabled wkw compression when converting NIFTI files
v0.2.46
fix edge case in get_next_anisotropic_mag (fixes #176) (#179) Co-authored-by: Norman Rzepka <[email protected]>
v0.2.45
Fix nifti file conversion (#180) * use comparisons with absolute path only * change used datatype for segmentation layer when converting from nifti files to uint8, so that max value will not cause overflow in voxelytics pipeline. * Reformat
v0.2.44
This release includes a new high-level dataset API. See https://github.com/scalableminds/webknossos-cuber/wiki/High-level-dataset-API-overview for details.
v0.2.43: Poetry (#175)
* use poetry instead of pip/setup.py * install poetry * docker * mention setuptools-scm * test publish * ci * ci * Update main.yml * ci * Merge branch 'poetry' of github.com:scalableminds/webknossos-cuber into poetry * publish
