v0.16.2

webknossos

Breaking Changes

• MagView.get_zarr_array now returns a tensorstore array instead of a zarr-python array. #1174

Changed

• Updated to WEBKNOSSOS API version 8. #1185
• Using tensorstore for reading and writing zarr 2 and 3 arrays. Removed zarrita and zarr dependency. #1174

v0.16.1

webknossos

Added

• Added .nrrd and .nhdr to supported suffixes. #1228
• Added more docstrings for many public classes and methods. #1225

Changed

• Removes vcr-py from developer dependencies for testing and adds proxay for recording and replaying API requests. #1198
• Removed the CZI installation extra from pip install webknossos[all] by default. Users need to manually install it with pip install --extra-index-url https://pypi.scm.io/simple/ webknossos[czi]. #1219
• Refactored the PimsTiffReader to read the data directly from the tiff file without creating a memmap-able copy first. This greatly reduces the time and storage requirements for converting large tiff files. #1212

Fixed

• Fixed unpickling of the SSL_Context to allow for a second or third pickling. #1223

v0.16.0

cluster_tools

Breaking Changes

• Removed the map_unordered function of executors. #1193

Changed

• Deprecated the test_pickling and debug_sequential executor strategies. The strategies multiprocessing_with_pickling and sequential should be used instead. #1193
• The sequential executor strategy no longer uses multiprocessing functionality internally and instead executes functions sequentially and synchronously in the same process. #1193

v0.15.11

webknossos

Fixed

• Fixed pickling issue that has been introduced in 0.15.9. #1218

v0.15.10

webknossos

Fixed

• Fixed pickling issue that has been introduced in 0.15.9. #1218

v0.15.9

webknossos

Changed

Removed the CZI installation extra from pip install webknossos[all] by default. Users need to manually install it with pip install --extra-index-url https://pypi.scm.io/simple/ webknossos[czi]. #1219

v0.15.8

webknossos

Changed

• Fixes SSL certificate verification for remote datasets by adding CA certificates using certifi. #1211

v0.15.7

webknossos

Added

• Added --coarsest-mag argument to the webknossos downsample command. #1203

Fixed

• Fixed an issue with merging annotations with compressed fallback layers.

v0.15.6

webknossos

Added

• Added add_mag_from_zarrarray to Layer class, to add existing Zarr arrays as a mag of a layer. #1151

Changed

• Replaced the Python package manager poetry with uv. #1199

cluster_tools

Changed

• Replaced the Python package manager poetry with uv. #1199

v0.15.5

webknossos

Added

• Webknossos API functions were added: Team.get_list(), Team.add("new_name"), User.assign_team_roles("teamName", isTeamManager: True) and RemoteDataset.explore_and_add_remote() are available now. #1196