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Updated README to include examples for recubing script (#150)
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* Updated README
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leowe authored and bulldozer-boy[bot] committed Nov 7, 2019
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Expand Up @@ -18,6 +18,7 @@ Created with [Python3](https://www.python.org/).
* `wkcuber.downsampling`: Create downsampled magnifications (with `median`, `mode` and linear interpolation modes). Downsampling compresses the new magnifications by default (disable via `--no-compress`).
* `wkcuber.compress`: Compress WKW cubes for efficient file storage (especially useful for segmentation data)
* `wkcuber.metadata`: Create (or refresh) metadata (with guessing of most parameters)
* `wkcuber.recubing`: Read existing WKW cubes in and write them again specifying the WKW file length. Useful when dataset was written e.g. with file length 1.
* Most modules support multiprocessing

## Supported input formats
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# Refresh metadata so that new layers and/or magnifications are picked up
python -m wkcuber.metadata --refresh data/target
# Recubing an existing dataset
python -m wkcuber.recubing --layer_name color --dtype uint8 /data/source/wkw /data/target
```

### Parallelization
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